Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01200 ATGGGGAGGAGTCCATGTTGTTGTAAAGCAGGACTGAACAGAGGAGCATGGACTGCCTTGGAAGATAAAATCCTCGTTGCTTATGTTAAAGTCCATGGAGAAGGGAAATGGAGGAATCTCCCCAAGAGAGCAGGTTTGAAACGATGTGGGAAGAGCTGCAGGCTTCGATGGCTGAATTATCTTAGACCTGACATCAAGAGGGGCAACATTTCCCATGATGAAGAGGAGCTCATCATCAGACTCCACAATCTTCTTGGCAACAGATGGTCTCTAATAGCTGGAAGACTGCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACAACTTTGAGAAAGAAGGTTCAATCTCAATCCTCTTCATCACCATCCAAACCAAGAACAATAAGCAAATCCAACGAGAAAAACCCACCTTCTTTAGGGACTCAACCCCAAGTAATTCGAACTAAGGCCTTAAGGTGCACCAAGGAGCTTGTCCTTCCATCTCTGAACAATAATCAAGCCATGTACTTAACGACCAAGAATTCAGTAGATCTTCAAACCCATCAGAACCAGCCAGTAATGTGTCAAGATTCGGATAATTTGATGATGGATTTTGGGACTAATGGAGAGCTTTGTGTGCAGTCCTGTCCCGACGCTAATTTCATGTCTCTAGCCGGTGATGATTTTCAAGTTAGAGACAGTGCGACAGGGGACCGTGAAAACAATAACAACTTGTCAACCAAATCTGATAACTCCCTACTGTTTGATGAACCGATTTTCGAGAATTGGATGGCAAATGATTGTCTTGAACTAAATGGCGCATTGGATCTTCGATCTTTGACTTCTTTTCTTGATTCAGAGGAATGGCTCTCTGTCATCTCTGATATTAATGGAAGATACCAGGTGGATGAAAGCTCAAGGGAACCATAA 915 0.4339 MGRSPCCCKAGLNRGAWTALEDKILVAYVKVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISHDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTTLRKKVQSQSSSSPSKPRTISKSNEKNPPSLGTQPQVIRTKALRCTKELVLPSLNNNQAMYLTTKNSVDLQTHQNQPVMCQDSDNLMMDFGTNGELCVQSCPDANFMSLAGDDFQVRDSATGDRENNNNLSTKSDNSLLFDEPIFENWMANDCLELNGALDLRSLTSFLDSEEWLSVISDINGRYQVDESSREP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01200 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl10g01200 304 FunFam Transcription factor TT2 70 139 - -
Eupl10g01200 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl10g01200 304 CDD SANT 16 61 IPR001005 -
Eupl10g01200 304 FunFam MYB-related transcription factor 13 66 - -
Eupl10g01200 304 Gene3D - 70 139 - -
Eupl10g01200 304 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl10g01200 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl10g01200 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl10g01200 304 CDD SANT 71 112 IPR001005 -
Eupl10g01200 304 SMART sant 66 114 IPR001005 -
Eupl10g01200 304 SMART sant 13 63 IPR001005 -
Eupl10g01200 304 Gene3D - 14 66 - -
Eupl10g01200 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl10g01200 304 MobiDBLite consensus disorder prediction 115 146 - -
Eupl10g01200 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl10g01200 304 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01200 Eupl-Chr10 32056566 32057874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01200 1 127 MYB Transcription Factor Family AT4G38620 67.143 4.00e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl10g01200 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01200 K09422 - qsu:112011853 314.694