Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01188 ATGGCCGGAATTGATGAAAATGACGAAAAGCGGGACAAGGGAAGTTTGGATGCGAAGGATAGCTCTGATGCTTCGCCGAAGCAGATTGCTGACCCTGTCGTTTACAAACTCGTCCGAGTTGAAGGCGATGGAAGACTAGTTCCTGCTACAGATGATGAAGTTATGGAGGTTGAGGACTTGCTTGAAGATGAAAAGAGTGAACTACCTTTAGTTGCAGACACTGGACAAGCAGGAGGATGCATCGCAAACGAAGGGTTTTCCTCTGTGAAGGCTATTTTAGAGGGCTCAGAAGGGATGTCACAATCTGAGAGTACAGAAGCGGATGCGGAAAAGTTAAATGCTCGTCTTGAGTATATTGAGGTGATGTTGCAAAAGGTTAAACAGGAAGAGAGGCTTCGTTTATCAAGTGCATCACCTGATCATTCTTCTGATTATGTGAACGTAGATTGCCAGTGTTCTGATCAGCATGATCAATTGCCAGCTAGTAAAACTGAAAATTCTTTGCAGGAAACTGTTCCTTTGCTTTCACCCAGATTTAATGACTGCTGTACTAAGCAATTGGGGAGTGGTGAGACATGCTTGAAACCTACAGATGGGCTCATACTTGGTGACTCTTCAGCTTCTGTCTCCTGCACCAAGTCCAAGTCCAACTTTTCTAACATAAAGGGGGAAATATGCTTGGACAATCTATCAATCAGAGAACTTCATGAGACTTTCAAAGCAACATTTGGGAGAGAAACTTCTGTCAAGGACAAGTTGTGGCTTAAGAGGCGGATTGCCATGGGTTTGACTAATTCTTGTGATGTTTCAACCACAACTTTTATAATTAAAGATAAAGTCTTGGTTAAAAAGAAAGTCAAAGAAGCACATTGTAGGATGGAAAGCAGTAAGAGTGCAGATGAAGTCGATGGGGTATTTAATGATAGCTGTAAAGACCCACCTATCAGCCCCACTAACCAAATGGGAGTCCGGCAATCTTTATCTGGTAAGAGATTGAGGAAACCTAAAGCAGAATATGAATGTAAAAGTGAAGATCTCCATAGTGACCAGACAGCAGCCAAAAGAGTTCGAAAGCCCACAAAACGATATATTGAAGAACTTTCAGAAGTTGACACCAGGGAATGCAATGGGAGGTTCATATCATCTGTTAAAAATTCTGGACATGGTCAGTCCTCTCCGAAATCTCGTGTAAGGCCTGCTCGCAATGTTGGTTCAGATGGGACAACTGTTGTCACCAGGCAGGACTCTCTTGGAGGATCTGGTGTTCAGGTCCCATATGTTTCTAGGGTGCGAAGGGGGCGTCCCAGGAAAAACTTTATGGCTCTTATGAAATATCATCCCAGTGGCATGGGCATGGCAGCCAAACTGGTGAAGAAGGCCCTTGGTGTGCGTGTTTCTCGACAAGATAGTGAAAGTGGAAGCAAAATTTGGAAATCTAGAACTGCTCCTAAACGAATTCAACAGCCGGTGGTTGTTAAAACAGAACAAGATAAGCAGAATGTAGTAACATGCATGGTAGAGCCGCAGCAAGCTGTAGAGCTGGAAAATCCAGATTCATCTAGAGATAATTCAGATGATAATGTAGCAACTGTGCCAACCGCAAAAGGTGGGACCAGAAGGAAGCATCATCGAGCATGGAGTCTCTGCGAGGTTTTGAAGCTGGTTGAGGGGGTATCTAGGTATGGTGCCGGAAAGTGGTCTGAGATCAAGCGGCTTGCTTTTGCATCCTATACTTACCGCACCTCTGTTGATCTCAAGGATAAGTGGAGGAACTTGCTGAGGGCTAGCTTTGCACAAGCACCAACAGACAAGGGGATGAGGAACTCAAGGAAACACGTTTCAATGCCCATCCCCACGCATATTCTATTACGAGTAAGAGAGCTTGCAGAGATGCACTCACAGGCTGCACCTGATCTGAGCTCAGGCAAGTTTGCTGGTCGCAGTGGGAGAAGTGTACATGAAACAAGGTCTGGCTACCTGTAA 1983 0.4478 MAGIDENDEKRDKGSLDAKDSSDASPKQIADPVVYKLVRVEGDGRLVPATDDEVMEVEDLLEDEKSELPLVADTGQAGGCIANEGFSSVKAILEGSEGMSQSESTEADAEKLNARLEYIEVMLQKVKQEERLRLSSASPDHSSDYVNVDCQCSDQHDQLPASKTENSLQETVPLLSPRFNDCCTKQLGSGETCLKPTDGLILGDSSASVSCTKSKSNFSNIKGEICLDNLSIRELHETFKATFGRETSVKDKLWLKRRIAMGLTNSCDVSTTTFIIKDKVLVKKKVKEAHCRMESSKSADEVDGVFNDSCKDPPISPTNQMGVRQSLSGKRLRKPKAEYECKSEDLHSDQTAAKRVRKPTKRYIEELSEVDTRECNGRFISSVKNSGHGQSSPKSRVRPARNVGSDGTTVVTRQDSLGGSGVQVPYVSRVRRGRPRKNFMALMKYHPSGMGMAAKLVKKALGVRVSRQDSESGSKIWKSRTAPKRIQQPVVVKTEQDKQNVVTCMVEPQQAVELENPDSSRDNSDDNVATVPTAKGGTRRKHHRAWSLCEVLKLVEGVSRYGAGKWSEIKRLAFASYTYRTSVDLKDKWRNLLRASFAQAPTDKGMRNSRKHVSMPIPTHILLRVRELAEMHSQAAPDLSSGKFAGRSGRSVHETRSGYL* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01188 660 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 19 659 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 331 345 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 510 540 - -
Eupl10g01188 660 Coils Coil 109 129 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 1 20 - -
Eupl10g01188 660 Gene3D - 533 641 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 1 27 - -
Eupl10g01188 660 CDD SANT_TRF 544 594 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 639 660 - -
Eupl10g01188 660 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 538 597 IPR017930 -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 312 326 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 382 417 - -
Eupl10g01188 660 ProSiteProfiles Myb-like domain profile. 538 593 IPR001005 -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 513 531 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 382 398 - -
Eupl10g01188 660 MobiDBLite consensus disorder prediction 311 345 - -
Eupl10g01188 660 SUPERFAMILY Homeodomain-like 544 603 IPR009057 -
Eupl10g01188 660 SMART sant 542 595 IPR001005 -
Eupl10g01188 660 Pfam Myb-like DNA-binding domain 545 593 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01188 Eupl-Chr10 31906535 31919815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01188 546 605 Single Myb Histone (SMH) Gene Family AT1G72740 40.323 3.15e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl10g01188 Myb_DNA-binding 5.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01188 - - tss:122656495 793.112