Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01178 ATGGAATCTCCACGTCAACATTGTCATAATGTGAAACAATTAGGTCTTCAATTGCAAGACCAGGATTCGTCCTCAACTCAATCAACTGGGCAATCTCACCATGAATTGGCTACTATGGGGGGAGGCAGCCCTCATGGGCAATCTGGATATGATGAAACATATGGGAGGAGAGCGGAAGGTTACATGAAATCAGTTTTATCACTGGGAACTCCGGATTTTGTCTTCCCTTCTTCACAACTGGATTATGCCCAGTCAGTGGCTCGCATTCCTTATCCTTATGTTGATCCATACTATGGTGCATTATTGGCTGCTTATGGACCACAAGCCATTATTCATCCACAAATGGTGGGTATGGCACCTGCGCGAGTCCCACTGCCTCTTGATCCTGCAGAAGATGAACCTATCTATGTCAATGCAAAACAATACCGCGGGATCCTGAGACGGAGACAGTCCCGTGCGAAGCTTGAGGCTCAAAACAGACTTGCCAAAGCTCGAAAGCCATATCTTCACGAGTCTCGACATCTTCACGCATTGAGGAGGGTGAGGGGATCTGGGGGACGCTTTGTCAACACGAAGAAGGTGCAGCATTCCAAGCCTACCCTCTCTGCTGATGGCCAAAATGCCTCAGAGGTGGCTTTGCTACAGCTGGGTGGAAATCTATTGGAATCCGAAGTTCAATCAGAAACCGGTGATGCGGGTGCTTCCACCAGGTCCTGCTCCGACGTCACTAGTGCCTCCAATAGTGATGATATGTTCCGGCAACCGGATCTCAGGTTCTCAGTTTACCCTCCCCACATCGGTGGAACCTTGCAAGCTGGAGGCAGCATTATGCGTAATGGGTCCCAGCACCATGTTCATGTCATCTGA 867 0.4937 MESPRQHCHNVKQLGLQLQDQDSSSTQSTGQSHHELATMGGGSPHGQSGYDETYGRRAEGYMKSVLSLGTPDFVFPSSQLDYAQSVARIPYPYVDPYYGALLAAYGPQAIIHPQMVGMAPARVPLPLDPAEDEPIYVNAKQYRGILRRRQSRAKLEAQNRLAKARKPYLHESRHLHALRRVRGSGGRFVNTKKVQHSKPTLSADGQNASEVALLQLGGNLLESEVQSETGDAGASTRSCSDVTSASNSDDMFRQPDLRFSVYPPHIGGTLQAGGSIMRNGSQHHVHVI* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01178 288 PRINTS CCAAT-binding transcription factor subunit B signature 134 156 IPR001289 GO:0003700|GO:0006355
Eupl10g01178 288 PRINTS CCAAT-binding transcription factor subunit B signature 165 188 IPR001289 GO:0003700|GO:0006355
Eupl10g01178 288 Gene3D - 131 193 - -
Eupl10g01178 288 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 133 188 IPR001289 GO:0003700|GO:0006355
Eupl10g01178 288 SMART cbf3 130 191 IPR001289 GO:0003700|GO:0006355
Eupl10g01178 288 MobiDBLite consensus disorder prediction 16 36 - -
Eupl10g01178 288 ProSitePatterns NF-YA/HAP2 subunit signature. 136 156 IPR018362 GO:0003677|GO:0016602
Eupl10g01178 288 ProSiteProfiles NF-YA/HAP2 family profile. 131 191 IPR001289 GO:0003700|GO:0006355
Eupl10g01178 288 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 256 IPR001289 GO:0003700|GO:0006355
Eupl10g01178 288 MobiDBLite consensus disorder prediction 224 251 - -
Eupl10g01178 288 MobiDBLite consensus disorder prediction 16 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01178 Eupl-Chr10 31741170 31751651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01178 11 273 CCAAT-HAP2 Transcription Factor Family AT1G54160 43.310 4.65e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Eupl10g01178 CBFB_NFYA 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01178 K08064 - nnu:104600617 354.369