Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01166 ATGGTTTGGTTTCAGTGCGAGGACTGCGGTGAGAACTTGAAGAAGCCAAAGTTGCTGAACCATTTCAGGATTTGCTCTGCGAGCAAGTTATCGTGCATCGATTGTGGAGAAACATTTGGGCAACAAAGTGTTCAAGGCCATGCCCAATGCATTACAGAAGCGGAGAAATATGGTCCAAAAGGTCAAGCGAAAGCTTCAAATAATACCCCAGCAAAGCCTAACAAAGACTCGAAGCAAAAACCCGATATTGATATAAATGTTGGGTTATCTTCACGTCCCCCCTGGTTTTGTAGCCTCTGCAATACCAGCGCTACAAGTAGGCAAACCTTACTGCTTCATGCCGAAGGAAAGAAACACAGGGCAAAAGCTCGAGCTTTCCATGCTTCGAAGCAACAACCTAAACAGACAGAAGAATCCATTCCAAATGCCAAGGATACAACCAGTGACATTCCAAAGGGAGAATCACTCTGCACTAAAGATGCAGAGGAACCAAAAGGACAGGATCAGCTGAAAGCCACTGCTCTGCATAACAGCTCTGAAGCAGAAAATGGAAGTCTCTCATCGAAGAAAAAGAGAAAACTCAATGCATCTGATGATGGAGGTGCCAAAAAAAAAGAAGGTAATGATAGTTCAGGTGATTTAAGCAATGGCGAAGTGATTCAAGCAAAAAGAGCAAAAGCAGAAGAATCAGATAAAACCGAACACGTTGATGCGCCCGAACAAGATAAGACGGACAAAACTGGCCATACAAAGGAAGCTAACAAGGAGAAAATAAAGTGGAAGAAGCTGATTTCTTCAATCTTGAAATCGAACCCCGATGGAGCTCTGAAGATGAGAAAACTGCAAAAGTTTGTTTTGAAGGCCCTGCAGGAATCTGGCGTCACCGAAGATGAGGCCCAACTCAAGGACACGCTCATGCACAAGATTAATACAAGCTCCAGATTCACACTTGATAACAAGCTGGTTCGATTGGTAGCGAAAAGCTGA 987 0.4387 MVWFQCEDCGENLKKPKLLNHFRICSASKLSCIDCGETFGQQSVQGHAQCITEAEKYGPKGQAKASNNTPAKPNKDSKQKPDIDINVGLSSRPPWFCSLCNTSATSRQTLLLHAEGKKHRAKARAFHASKQQPKQTEESIPNAKDTTSDIPKGESLCTKDAEEPKGQDQLKATALHNSSEAENGSLSSKKKRKLNASDDGGAKKKEGNDSSGDLSNGEVIQAKRAKAEESDKTEHVDAPEQDKTDKTGHTKEANKEKIKWKKLISSILKSNPDGALKMRKLQKFVLKALQESGVTEDEAQLKDTLMHKINTSSRFTLDNKLVRLVAKS* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01166 328 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Eupl10g01166 328 Pfam Zinc-finger of C2H2 type 95 119 - -
Eupl10g01166 328 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Eupl10g01166 328 MobiDBLite consensus disorder prediction 58 85 - -
Eupl10g01166 328 Gene3D - 1 50 - -
Eupl10g01166 328 Gene3D Classic Zinc Finger 89 132 - -
Eupl10g01166 328 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Eupl10g01166 328 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Eupl10g01166 328 MobiDBLite consensus disorder prediction 185 211 - -
Eupl10g01166 328 MobiDBLite consensus disorder prediction 115 254 - -
Eupl10g01166 328 MobiDBLite consensus disorder prediction 222 254 - -
Eupl10g01166 328 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Eupl10g01166 328 MobiDBLite consensus disorder prediction 129 153 - -
Eupl10g01166 328 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Eupl10g01166 328 SUPERFAMILY beta-beta-alpha zinc fingers 90 128 IPR036236 -
Eupl10g01166 328 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 325 IPR039999 GO:0003677
Eupl10g01166 328 MobiDBLite consensus disorder prediction 155 169 - -
Eupl10g01166 328 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Eupl10g01166 328 FunFam UBP1-associated proteins 1C 89 132 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01166 1 233 C2H2 Transcription Factor Family AT2G19380 35.350 9.09e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl10g01166 zf-LYAR 1.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01166 K15263 - nnu:104600639 448.743