Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01149 ATGGGAGCTCCGAAGCAGAAATGGACTTCGGAAGAAGAAGAAGCTCTTCGTGCGGGCATCGCCAAGCACGGCACTGGAAAATGGAAGAACATCCAAAAGGATCCTGAATTCGCTCTCTATCTCTCTGCTCGTTCCAATATCGATTTAAAGGATAAATGGCGTAACATGAGTGTTAGTGCAAGTGGGCAAGGCTCTAGGGATAAATTTAGGGCACCAAAGTTAAAGGCTCTTCCAGCTGTTCCATTGTCCACTTTCCAGACTTCTGCTTCCTCCACTCCAGTTGCTCAGGATGCATCATTAGATACAGTCACGGATTCTTCAAAGAGTGCACTAGACGGGAAAACTGCTCCTCGGTACAATGCAATGATTTTCGAAGCACTTTCAACCTTGAAAGATCCGAATGGATCAGAAATTGGTGCCATTGTTAGCTTTATTGAGCAAAGGCATGAAGTGCCTCAAAATTTTAGAAGGTTGTTAAGTTCAAAGTTGAGACGGCTTGTTGCACAGCAAAAACTTGAAAAGGTCCAAAACTGCTTCAAGATCAAAAAAGATATCTTGTTTGGAACAAGAACACCTACCCCAAAACAAAAAGACGTCCGCCCAAGGCAGTCGCAAAACCCTGGGTTTGGCACTTCTGCTGACACGTTAGAAGATGTGGCGATCGCTGCTGCCTACAAGATCGCTGAAGCAGAAAACAAGTCATTCGTGGCATCAGAAGCAGTTAAGGAGGCAGAGAAGATAGCGAGGATGGCCGAAGACACGGATTCATTGCTACAGCTAGCGAAAGAGATATTTGAACAATGTTCACGAGGCGAAATTGTGCTCATGGCTTAA 834 0.4508 MGAPKQKWTSEEEEALRAGIAKHGTGKWKNIQKDPEFALYLSARSNIDLKDKWRNMSVSASGQGSRDKFRAPKLKALPAVPLSTFQTSASSTPVAQDASLDTVTDSSKSALDGKTAPRYNAMIFEALSTLKDPNGSEIGAIVSFIEQRHEVPQNFRRLLSSKLRRLVAQQKLEKVQNCFKIKKDILFGTRTPTPKQKDVRPRQSQNPGFGTSADTLEDVAIAAAYKIAEAENKSFVASEAVKEAEKIARMAEDTDSLLQLAKEIFEQCSRGEIVLMA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01149 277 SMART sant 4 59 IPR001005 -
Eupl10g01149 277 SUPERFAMILY "Winged helix" DNA-binding domain 112 194 IPR036390 -
Eupl10g01149 277 MobiDBLite consensus disorder prediction 190 211 - -
Eupl10g01149 277 SMART h15plus2 113 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl10g01149 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl10g01149 277 Gene3D - 2 58 - -
Eupl10g01149 277 Pfam linker histone H1 and H5 family 117 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl10g01149 277 PANTHER SINGLE MYB HISTONE 4 1 276 IPR044597 GO:0003691
Eupl10g01149 277 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Eupl10g01149 277 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Eupl10g01149 277 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Eupl10g01149 277 Gene3D - 113 186 IPR036388 -
Eupl10g01149 277 FunFam Telomere repeat-binding factor 1 2 58 - -
Eupl10g01149 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Eupl10g01149 277 CDD SANT_TRF 6 56 - -
Eupl10g01149 277 FunFam Telomere repeat-binding factor 1 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01149 Eupl-Chr10 31382835 31396579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01149 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 50.000 3.47e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl10g01149 Linker_histone 2.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01149 K09422 - nnu:104586672 428.713