Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01148 ATGGCAGGATCGCCTCCCGATGGATTTGATGGTCGTAAGTATGATAGCAAGATGGATGAATTGCTTGGAGATGAGGGGAATGATTTTTTTACATCTTATGATGAAGTTCACGATAGTTTTGATAAAATGGGTTTGAAAGAGAACCTTCTGAGAGGCATCTATGCTTATGGATTTGAAAAGCCCTCTGCTATCCAGCAGCGAGGAATTGTACCCTTCTGCAAGGGGATTGATGTAATTCAGCAGGCACAATCTGGTACGGGAAAAACAGCAACTTTCTGCTCCGGAATTTTGCAGCAGCTGGATTACGATTTAGTGGAATGTCAGTCTTTGGTTCTTGCTCCTACCAGAGAGCTTGCACAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTATTTGGGTGTTAAGGTTCATGCTTGTGTTGGTGGAACCAGTGTCCGCGAGGATCAACGGATCCTTTCCAGTGGGGTTCATGTTGTTGTTGGTACTCCAGGTCGTGTCTTTGACATGTTGCGCAGACAGTCTCTTCGCTCAGACTACATCAAGATGTTTGTATTAGATGAGGCTGATGAAATGCTCTCACGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTCCTCCCTGGGAAAGTTCAGGTTGGTGTTTTCTCTGCCACAATGCCACCTGAAGCTCTTGAGATCACAAGGAAGTTCATGAACAAGCCCGTGAGGATTCTGGTGAAGCGCGATGAGCTTACCCTCGAGGGTATCAAGCAGTTCCATGTCAATGTCGACAAGGAAGAGTGGAAGCTGGAGACTCTATGTGATCTCTATGAGACCTTGGCCATCACTCAGAGTGTCATTTTTGTGAACACCCGACGCAAGGTGGACTGGCTGACTGACAAAATGAGGAGCCGTGACCACACTGTCTCTGCCACCCATGGAGACATGGACCAGAACACGAGGGACATCATCATGCGTGAATTCCGATCTGGGTCTTCACGTGTGCTCATTACCACAGACCTCCTGGCCCGAGGTATCGATGTTCAGCAGGTATCTCTGGTCATAAACTATGATCTGCCAACTCAACCAGAGAACTACCTCCACCGTATTGGACGTAGTGGACGGTTTGGAAGGAAAGGTGTCGCAATCAACTTTGTGACACATGACGATGAGAGAATGCTGACTGACATCCAGAGGTTTTATAACGCGGTGATTGAGGAGCTGCCCTCAAATGTTGCGGATCTGCTCTGA 1236 0.4717 MAGSPPDGFDGRKYDSKMDELLGDEGNDFFTSYDEVHDSFDKMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGILQQLDYDLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRSDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTHDDERMLTDIQRFYNAVIEELPSNVADLL* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01148 411 Gene3D - 247 411 IPR027417 -
Eupl10g01148 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 392 IPR027417 -
Eupl10g01148 411 FunFam Eukaryotic initiation factor 4A-III 246 411 - -
Eupl10g01148 411 SMART ultradead3 57 254 IPR014001 -
Eupl10g01148 411 Pfam DEAD/DEAH box helicase 63 224 IPR011545 GO:0003676|GO:0005524
Eupl10g01148 411 CDD SF2_C_DEAD 251 381 - -
Eupl10g01148 411 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 185 193 IPR000629 -
Eupl10g01148 411 FunFam Eukaryotic initiation factor 4A-II 26 245 - -
Eupl10g01148 411 PANTHER RNA HELICASE 34 395 - -
Eupl10g01148 411 SMART helicmild6 291 372 IPR001650 -
Eupl10g01148 411 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 239 IPR014001 -
Eupl10g01148 411 CDD DEADc_EIF4A 43 240 - -
Eupl10g01148 411 Gene3D - 28 246 IPR027417 -
Eupl10g01148 411 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 38 66 IPR014014 GO:0003724
Eupl10g01148 411 Pfam Helicase conserved C-terminal domain 264 372 IPR001650 -
Eupl10g01148 411 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 250 411 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01148 Eupl-Chr10 31376804 31380118 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01148 1 411 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01148 K03257 - cave:132183612 768.074