Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01146 ATGGGAGGAGATGCGAGGAACTGGGACGAAGATGCCTATAGAAACAGCATTTTGAAGGAGAGAGAGCTCCAATCTCGAACAGTTTTCAGAACCGTCTTTGCTCCGTCTCAAAACCCTAATCCAGAGATCATCATCGTCGCCTCAAGCGACGGATCCGTCGCTCCGTACTCAATCTCGTCTTGCATCTCTTCATATCCATTGCGTTTTAATAAGGGTAGGCATCAAAAGCCATTGTCTGGCTTTTTAGTGGCTGAACCTCTTTGCCTCCTTCAAGGACATGATGGCCCGGCATATGATGTCAAATTTTATGGTGATGGGGAAGATTCTTTATTGCTGAGTTGTGGAGATGATGGTCGGATTAGAGGGTGGAGGTGGAAGGAAATTCTGAACTCAGAGATGCCTATTTCTATGCGAGGAAATCATTTGAAGCACGTTCTTGACTTGGTGAACCCTCAACATAAAGGTCCTTGGGGTGCGCTTTCTCCAATCCCTGAAAACAATGCCATTGCCGTTGATAACAAGGGAGGATCCATTTTTTCGGCCACTGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACAAGTAAAATCAAAATGGCTTTCAGGGGGCATTCAGACTACTTGCATTGCATTGTTGCACGTAATTCAAGCAATCAGATCATAACCGGCTCAGAGGATGGGACTGCACGAATATGGGATTGCAAAAGTGGAAAATGTACTTTCGTGATAGATCCAGACAAGGATATGAAGTTGAAGGGAGCTTCCTCTTGGATTAGTTGCATAAATCTCGATGCAAGTGAAAGCTGGTTGGCTTGTGGCAATGGTAGGGGTCTGTCAGTCTGGAATCTTCCTGCTTCTGAGTGCATTTCAAGGATTGCTACTTGTTCTCCTGCTCAAGACATATTATTTGATGACAATCAAATTTTAGCCGTTGGAGCAGAACCTGTGCTTAGTCGTTTCGACATGAATGGGATGACTCTCTCACAGATACAATGTGCCCCCCAGTCAGCGTTTTCCATCTCCCTGCATACATCGGGTGTTATGGCAGTTGCAGGCTACGGAGGGCTAGTGGATGTCATCTCGCAGTTTGGAAGCCATTTGTGCACATTCTGTTGCAGAGGTCATTAA 1128 0.4557 MGGDARNWDEDAYRNSILKERELQSRTVFRTVFAPSQNPNPEIIIVASSDGSVAPYSISSCISSYPLRFNKGRHQKPLSGFLVAEPLCLLQGHDGPAYDVKFYGDGEDSLLLSCGDDGRIRGWRWKEILNSEMPISMRGNHLKHVLDLVNPQHKGPWGALSPIPENNAIAVDNKGGSIFSATGDSCAYCWDVETSKIKMAFRGHSDYLHCIVARNSSNQIITGSEDGTARIWDCKSGKCTFVIDPDKDMKLKGASSWISCINLDASESWLACGNGRGLSVWNLPASECISRIATCSPAQDILFDDNQILAVGAEPVLSRFDMNGMTLSQIQCAPQSAFSISLHTSGVMAVAGYGGLVDVISQFGSHLCTFCCRGH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01146 375 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 373 IPR042626 -
Eupl10g01146 375 SUPERFAMILY WD40 repeat-like 30 356 IPR036322 GO:0005515
Eupl10g01146 375 SMART WD40_4 22 57 IPR001680 GO:0005515
Eupl10g01146 375 SMART WD40_4 244 282 IPR001680 GO:0005515
Eupl10g01146 375 SMART WD40_4 156 191 IPR001680 GO:0005515
Eupl10g01146 375 SMART WD40_4 83 124 IPR001680 GO:0005515
Eupl10g01146 375 SMART WD40_4 194 233 IPR001680 GO:0005515
Eupl10g01146 375 Gene3D - 161 369 IPR015943 GO:0005515
Eupl10g01146 375 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 233 - -
Eupl10g01146 375 Pfam WD domain, G-beta repeat 200 233 IPR001680 GO:0005515
Eupl10g01146 375 Gene3D - 8 155 IPR015943 GO:0005515
Eupl10g01146 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 123 IPR001680 GO:0005515
Eupl10g01146 375 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01146 Eupl-Chr10 31346883 31367576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01146 169 243 Eukaryotic Initiation Factors Gene Family AT2G46280 32.000 7.78e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01146 - - msin:131222802 614.379