Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01122 ATGCATCAGACTGTGATGATGAAGGGTCACATAAACCAACACCTCCCAGTTGTGGAGGAGAACATGTCTAATTTGACTTCTGCATCTGGTGATGGAAGTGTTTCTTCAAGCAATAGAGCTGAAACTGGATCCATTTACCAACAACAGTCCTTCGCTTCACCACATCAAACTCCAGTAGTGAAGAAGAAGAGAAACCTCCCAGGAAACCCAGACCCAGAAGCAGAAGTGATAGCTTTGTCACCTAAGACTCTCATGGCGACGAATAGGTTTGTGTGTGAGATCTGTAACAAAGGGTTTCAAAGAGATCAGAACCTTCAGCTTCACAGAAGAGGCCATAACCTACCATGGAAGCTAAAGCAGCGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCTAATTGTGTGCATCATGATCCATCAAGGGCTCTTGGAGACCTTACAGGAATCAAGAAGCACTTTTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGACAAGTGTTCAAAGCGTTACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGATGGATAGTTTTGTCACTCACAGAGCCTTCTGTGATGCTTTAGCAGAAGAAAGTGCAAGAGCATTCAAAGCAAACCCAATTCTCTACTCTCAACCTGGAACTTCAACACCACAAATAAACCTACAACCCCAATCCAATAGCCATAACCTTCAATCAATCTCACTCAAAAGAGAGCAACTACTACAACAACAATATCACAATCTAAGACCAGAGATACCTCCATGGTTAGCTTGCCCACCTGTAGACTTCTCTACAATTAACCAAGAATTCTCGGCGACTCAAGCTTCAATACACCATGAAAACCCTATCCCTAATCTTGATCCTACTCTTCCTCCTTACCATCCATCAGCCTCCCCACAAATGTCTGCAACTGCATTACTGCAAAAAGCAGCTCAAATGGGTGCAACCATGAGAAAACCTTCTTCTTCATCAGCCACGATCAGACCCCACCATGCTCACATGTCTGGTAGTACTGGTTTCGGTCTGGGTTGGTCTTCACGTGAAGAGATGGAAAGTAGGTTTGTTCATGGCTTGTCTACTTTTGGGAATAAAGCTGATGTTTCTTCTGGTCTTATGGACCACGTATCTGCAAGTGCAGGAGCAGGAGCTCCTTCTCTACTTCAAGACATGATGAGTTCTCTCTCTTCTGCTAGTGGGTTTGATGGATCGTCGTCCTTCGAAGAGGCCTTTAATGGTGGGATGGTGAATTCAAAGAGAGATGGGAATGAAAATCTCTCAAAAACAACCACAACCCATCTCAGTATCAATGATGAGCGTCGTGGTGGTGGTGAGAATGATGGATTGACTAGAGATTTCTTGGGTCTTAGAGCACTTTCTCATACTGATATTCTCAACATAGCTGGGTTTGATCAGTGCATGAGATCTTCTTCTCCATATGATCAGCAGCAAAATCAGAATCAGAAACCATGGCAAGGTTAG 1548 0.4425 MHQTVMMKGHINQHLPVVEENMSNLTSASGDGSVSSSNRAETGSIYQQQSFASPHQTPVVKKKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRMDSFVTHRAFCDALAEESARAFKANPILYSQPGTSTPQINLQPQSNSHNLQSISLKREQLLQQQYHNLRPEIPPWLACPPVDFSTINQEFSATQASIHHENPIPNLDPTLPPYHPSASPQMSATALLQKAAQMGATMRKPSSSSATIRPHHAHMSGSTGFGLGWSSREEMESRFVHGLSTFGNKADVSSGLMDHVSASAGAGAPSLLQDMMSSLSSASGFDGSSSFEEAFNGGMVNSKRDGNENLSKTTTTHLSINDERRGGGENDGLTRDFLGLRALSHTDILNIAGFDQCMRSSSPYDQQQNQNQKPWQG* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01122 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Eupl10g01122 515 MobiDBLite consensus disorder prediction 24 74 - -
Eupl10g01122 515 Gene3D Classic Zinc Finger 144 224 - -
Eupl10g01122 515 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Eupl10g01122 515 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Eupl10g01122 515 MobiDBLite consensus disorder prediction 24 56 - -
Eupl10g01122 515 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Eupl10g01122 515 FunFam protein indeterminate-domain 12-like 69 137 - -
Eupl10g01122 515 MobiDBLite consensus disorder prediction 434 469 - -
Eupl10g01122 515 SMART c2h2final6 166 186 IPR013087 -
Eupl10g01122 515 SMART c2h2final6 131 161 IPR013087 -
Eupl10g01122 515 SMART c2h2final6 90 112 IPR013087 -
Eupl10g01122 515 Gene3D Classic Zinc Finger 69 137 - -
Eupl10g01122 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 497 IPR031140 -
Eupl10g01122 515 MobiDBLite consensus disorder prediction 434 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01122 Eupl-Chr10 31087585 31090334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01122 18 339 IDZ Gene Family AT1G55110 61.765 3.48e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl10g01122 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01122 K25870 - nnu:104600695 718.383