Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01100 ATGACTCCAATTTATCTAAGTCCACCACCCTTTCCTTTTCCTCCTGTAGAGCCAAATGAAAATCAACACCTTCTACTCTTTAGTCCACCACCATCTCAAGCTTCTGGTGCTGCTTCTTCTCTGTCAAGTCCTATTTTCTTCAACCCATCTCATGATCATGGAGAGATTTATGATGAAGAACAACAAGGACAACAATTACAAGAGGCGGCCAATAAGTATGTTTCACATGGTGAATCAAGTGATCATCAATTCCTCACATATCCTTCACTTCCAACTTTGGAGAATGATAATAACTATGGCCTTGAATTATCCATTTGTAAACAAGAGGATAACGATGACAATCAAAGTGGTAATGGTTCAGTTAAGTGGATGTCTTCAAAGATGAGGTTGATGAGGAAGATGATGAATTCTGATCGAATGGTTGCCGACAAACCGATAAGGAGTACACATACGTTTATAGATCAGCAGGAACCGCCATCGCCTTTCGACACTGACAACAGCAGCAACAATTCCTCTAATAACAACAACAACACTATTAGAGTCTGCTCTGATTGTAACACAACCAAGACCCCTCTTTGGAGGAGTGGTCCTAGAGGTCCCAAGTCGCTTTGCAACGCCTGTGGAATTCGACAAAGGAAGGCGAGACGGGCCTTGGCGGCAGCTGCAGCTGCAGCAAGCAGCACAATTAATCCCACCGACACATCATCTATGCGGAGTACTAAGGTGCAACACAAAGAGAAGAGATCGGATGACGGCTATGTTGCACAATACAAGAAACGGTGCAAACTCGGTGCCCCTCGTAGTGGAAGAAAGAAGATTTGTTTTGAGGATTTCACTGTAAGTCTGAGTAAGAATTTAGCTTTCCACCAAGTGTTCCCACAAGACGAGAAGGAAGCTGCGATCCTGCTAATGGCTCTATCTTGTGGCCTTGTTCATGGCTGA 942 0.4395 MTPIYLSPPPFPFPPVEPNENQHLLLFSPPPSQASGAASSLSSPIFFNPSHDHGEIYDEEQQGQQLQEAANKYVSHGESSDHQFLTYPSLPTLENDNNYGLELSICKQEDNDDNQSGNGSVKWMSSKMRLMRKMMNSDRMVADKPIRSTHTFIDQQEPPSPFDTDNSSNNSSNNNNNTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAAAASSTINPTDTSSMRSTKVQHKEKRSDDGYVAQYKKRCKLGAPRSGRKKICFEDFTVSLSKNLAFHQVFPQDEKEAAILLMALSCGLVHG* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01100 313 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
Eupl10g01100 313 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 313 - -
Eupl10g01100 313 Gene3D - 177 253 IPR013088 GO:0006355|GO:0008270
Eupl10g01100 313 SMART GATA_3 176 227 IPR000679 GO:0006355|GO:0043565
Eupl10g01100 313 FunFam GATA transcription factor 21 176 253 - -
Eupl10g01100 313 MobiDBLite consensus disorder prediction 150 178 - -
Eupl10g01100 313 CDD ZnF_GATA 181 213 IPR000679 GO:0006355|GO:0043565
Eupl10g01100 313 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
Eupl10g01100 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 215 - -
Eupl10g01100 313 ProSiteProfiles GATA-type zinc finger domain profile. 176 212 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01100 Eupl-Chr10 30812093 30814032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01100 268 313 C2C2-Gata Transcription Factor Family AT4G26150 65.217 6.79e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl10g01100 GATA 5.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01100 - - ming:122084653 318.931