Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01052 CTCTCCCCCTCTTTCTTTCTCAGAACCCTAGTCATAGTTCTTTTTTCCTATTTTTCTGACTCGTTCTTGCAGCGCCTCAAGCTTCAAACCCTAATCTCACCGCTCGCAGAGGATTCAAAGAGAATGGGAGAAACAAGGGATAACGATGCATACGAGGAAGAGCTTCTCGACTACGAAGAGGACGAAGATAAGGTCCCTGACTCCAATGGGACCAAGACCACCGGCGAAGCAGTGAAGAAGGGTTACGTTGGAATTCACAGTTCCGGATTCAGAGATTTTCTTTTGAAGCCAGAGCTTCTTCGGGCCATTGTGGATTCGGGATTTGAGCATCCTTCAGAAGTTCAACATGAGTGCATTCCTCAAGCTATCTTGGGAATGGATGTCATCTGTCAAGCAAAGTCTGGGATGGGAAAAACTGCCGTTTTCGTCCTCTCAACACTGCAGCAAATTGAGCCTGTTGCAGGTCAAGTCGCTGCGCTTGTTTTATGCCACACAAGGGAGTTGGCTTATCAGATATGTCATGAGTTTGAGCGGTTCAGCACTTACTTGCCTGATATTAAAGTTGCTGTATTCTATGGTGGTGTCAATATCAGGACTCACAAGGATTTACTGAAGAACGAGTGCCCTCATATTGTTGTTGGGACACCTGGGAGGATACTGGCACTAGCAAGAGATAAAGACCTTGCATTGAAGAATGTTAGGCATTTTATCCTTGATGAATGTGACAAAATGCTTGAATCGCTTGACATGCGGAGAGATGTGCAGGAGATTTTCAAGATGACTCCTCATGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAGATCCGTCCTGTTTGCAAGAAATTCATGCAAGATCCCATGGAAATTTATGTGGACGATGAGGCCAAATTGACCCTACATGGTCTTGTGCAGCACTACATTAAATTGACCGAGTTGGAAAAAAACCGCAAGCTGAACGATCTCCTGGACGCCTTGGATTTTAATCAAGTGGTCATCTTTGTCAAAAGTGTGAATAGAGCAGCAGAACTGAACAAGTTACTCGTGGAGTGCAACTTCCCATCTATATGCATCCATTCTGGAATGTCACAGGAAGAAAGGTTGATGCGGTACAAGGGTTTTAAGGAGGGGCACAAAAGGATTCTTGTGGCAACGGATTTGGTCGGCCGGGGAATTGACATTGAGCGCGTCAACATTGTGATCAACTATGATATGCCTGATTCTGCTGACACTTACTTGCACAGGGTTGGCAGGGCTGGTCGGTTCGGTACCAAAGGACTTGCGATCACATTTGTCTCATCTGCTTCCGACTCGGATGTTCTTAATCAGGTTCAAGAGAGGTTTGAGGTGGACATTAAAGAGCTTCCGGAGCAAATTGATACCTCTACATACAGTATGTTTCCCTACTTTTATGCCACGCACCTCACAATTTACACCTCTGGACCATATATTTGGGTCTTAGCCATTGCTCCCAAACAGCTGTATGTGCTGTGA 1500 0.4527 LSPSFFLRTLVIVLFSYFSDSFLQRLKLQTLISPLAEDSKRMGETRDNDAYEEELLDYEEDEDKVPDSNGTKTTGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIRTHKDLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYSMFPYFYATHLTIYTSGPYIWVLAIAPKQLYVL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01052 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 116 IPR014014 GO:0003724
Eupl10g01052 499 SMART helicmild6 344 425 IPR001650 -
Eupl10g01052 499 Coils Coil 41 61 - -
Eupl10g01052 499 CDD SF2_C_DEAD 305 434 - -
Eupl10g01052 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 447 - -
Eupl10g01052 499 FunFam DEAD-box ATP-dependent RNA helicase 56-like 76 294 - -
Eupl10g01052 499 CDD DEADc_DDX39 87 294 - -
Eupl10g01052 499 Pfam DEAD/DEAH box helicase 113 278 IPR011545 GO:0003676|GO:0005524
Eupl10g01052 499 SMART ultradead3 107 308 IPR014001 -
Eupl10g01052 499 Gene3D - 301 469 IPR027417 -
Eupl10g01052 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 465 IPR001650 -
Eupl10g01052 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 442 IPR027417 -
Eupl10g01052 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 292 IPR014001 -
Eupl10g01052 499 FunFam DEAD-box ATP-dependent RNA helicase 301 469 - -
Eupl10g01052 499 Pfam Helicase conserved C-terminal domain 318 425 IPR001650 -
Eupl10g01052 499 Gene3D - 84 300 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01052 Eupl-Chr10 30351506 30360295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01052 42 466 Eukaryotic Initiation Factors Gene Family AT5G11200 84.979 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01052 K12812 - mof:131150533 810.061