Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g01020 ATGGCTACCGTTCCTGGGGCTTTGATTTGGGAGATCGTGAGGAAGAACAACGCGTTTCTCGTGAAGGAGTTCGGTAATGGCACTCAGAAGGTGCAGTTCAGCAAGGAGAGTAACAACCTCTACAACGTTAACTCCTACAAGTACTCAGGGTTAGCGAACAAGAAAACAGTTACTATTCAACCTGGAGGGAAAGATCATTCAGTGGTGCTTGGGACGACGAAGTCAAAGAAGCAGAACAAACCTGCAAATTTGATTCACAAGTCAGTCATGAAGAAGGAGTTCCGTCGTATGGCAAAGGCTGTTGCCAACCAGGTTGCAGATAACTACTACAGACCTGATTTGAAGAATGCAGCCCTTGCAAGGCTGAGTGCTGTGCACAGGAGCCTTAGGGTTGCGAAGTCTGGTGTGAAGAAGAGGAACAGGCAGGCTGTTAGGACCTGTGGCAGGAAGTGA 453 0.4834 MATVPGALIWEIVRKNNAFLVKEFGNGTQKVQFSKESNNLYNVNSYKYSGLANKKTVTIQPGGKDHSVVLGTTKSKKQNKPANLIHKSVMKKEFRRMAKAVANQVADNYYRPDLKNAALARLSAVHRSLRVAKSGVKKRNRQAVRTCGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g01020 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 149 IPR002672 GO:0003735|GO:0005840|GO:0006412
Eupl10g01020 150 FunFam 60S ribosomal protein L28 5 133 - -
Eupl10g01020 150 Gene3D - 6 133 - -
Eupl10g01020 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g01020 Eupl-Chr10 30011163 30013386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g01020 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 75.524 4.63e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g01020 K02903 - nnu:104604423 260.766