Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00999 ATGGATAGTATGGGTTGGGACAACCCATCAGCAGTTGTCGCAAACGCGTCGGCACTGTGCCTATGGAGCAATCAGCAACATGAAATCAGAGAAAATTCGATGGTTTCTAGTGCTGATTACAGTGAAAAGATGGATCTCATCGCTGAAGGTTTATTCGACCCATGTCTTGAGCTCCAAGGAATTAAAACATGTAACACTAGTTCGACGAATTCGGATAGAGTAAGCGAAATGGTCCAACAGTTAGCTCCAGCTTTAGATTCGATAAATGTTGCTTCCAATTTGAACTTATTGCAAAGGCAAGAAGCAGTAAGGTTAGCAGCAGATACTGTGCTTGCGAAATCAGGAGCTGGAACTAGTTGGGGAGAAGCTCTAACTGCTGAATTATGTTCTTCTCCTATGATGAACAGGCCTTACATCATGAGCCCGTTGAGTGGTCTAATGGCGGATTTTGTCACAGCTGATCAACTGCAAGTCACTAATGGCATCGAAGATGCTAATACCATTGGACTTTCCGCGACAGGATCACTCGAGTCCCTTGACTGTTTGCTGTCCACAACAAACAGCAACGCAGAAACATCGGTGGAAGACGATGGCATTTCCATGATTTTTTCTGATTGCAGAAATCTATGGAACTTTGGTTCTTGCAGTGCTGTTTCATCGGGAGAGTCCGAGAACAATGGTTCGAAAGAAGTATCGAAAGCTTCTTCAAATCCATGTGTTAACAATGACAGATCTTCGGACACTAGGCGTAATTCTTCTAAAAGAAGCAAGGAGCAACAAGAGCTCAAAGGGAGTGTGAATTATCACTATTTTGATCTTCTTCAATCGGATTCTTCTACTACAGAAGGTGTTTTTCGACTGATCTCCGAGAATTCGCCGAAAACGAAGAAACCCAGATTGGAGAAGCATCAAAGGACGTCAAACATCAGCTTCCAACAGTCGAATTCATCTGTATCTTCAGTTGATGAGCCTGATACCGAGGCTATTGCACACATGAAGGAGATAATTTATAGAGCTGCAGCTTTCAGGCCTGTGAATTTAGGCTTGGAAGTGGTGGAGAAGCCCAAGAGGAAGAATGTTAGAATATCAAGTGATCCACAGACTGCAGCTGCAAGGCAAAGGAGGGAGAGGATAAGTGAGAAGATTAGGGTTTTGCAGAGCTTGGTCCCTGGTGGGAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAACTATCTCAAGTTCCTCAGATCACAAGTCAAAGCCCTAGAAACCCTAGGTCACAAACTTGATTCAATGAATTACACCTCTACCAACCATCCCTTTTCATCACCACCATACAACCAAACTTTTCCCATGCAAACCTTTTTCCCATTCTCAAAACCTTAA 1374 0.436 MDSMGWDNPSAVVANASALCLWSNQQHEIRENSMVSSADYSEKMDLIAEGLFDPCLELQGIKTCNTSSTNSDRVSEMVQQLAPALDSINVASNLNLLQRQEAVRLAADTVLAKSGAGTSWGEALTAELCSSPMMNRPYIMSPLSGLMADFVTADQLQVTNGIEDANTIGLSATGSLESLDCLLSTTNSNAETSVEDDGISMIFSDCRNLWNFGSCSAVSSGESENNGSKEVSKASSNPCVNNDRSSDTRRNSSKRSKEQQELKGSVNYHYFDLLQSDSSTTEGVFRLISENSPKTKKPRLEKHQRTSNISFQQSNSSVSSVDEPDTEAIAHMKEIIYRAAAFRPVNLGLEVVEKPKRKNVRISSDPQTAAARQRRERISEKIRVLQSLVPGGSKMDTASMLDEAANYLKFLRSQVKALETLGHKLDSMNYTSTNHPFSSPPYNQTFPMQTFFPFSKP* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00999 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 368 428 IPR036638 GO:0046983
Eupl10g00999 457 MobiDBLite consensus disorder prediction 247 262 - -
Eupl10g00999 457 Gene3D - 365 433 IPR036638 GO:0046983
Eupl10g00999 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
Eupl10g00999 457 MobiDBLite consensus disorder prediction 288 321 - -
Eupl10g00999 457 MobiDBLite consensus disorder prediction 221 262 - -
Eupl10g00999 457 Pfam Helix-loop-helix DNA-binding domain 370 411 IPR011598 GO:0046983
Eupl10g00999 457 Coils Coil 401 421 - -
Eupl10g00999 457 MobiDBLite consensus disorder prediction 305 321 - -
Eupl10g00999 457 SMART finulus 368 417 IPR011598 GO:0046983
Eupl10g00999 457 CDD bHLH_AtIND_like 363 421 - -
Eupl10g00999 457 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 186 446 IPR045843 GO:0003700|GO:0006355
Eupl10g00999 457 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00999 Eupl-Chr10 29747598 29750052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00999 110 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.575 1.05e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl10g00999 HLH 7.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00999 - - vvi:100251455 527.324