Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00990 ATGTTGATGATCAGAGGAGGAAACCAACCAAATCCAACCGTCCACGTCCCGCCGTGGTCCCATTTCAACGATCAAGCGGCAGGAATGATCTTTCCTCTCCCTGTTAGCGGCATCTCTGGTAATGTTAACGGCAATGCTAACGGTGAAGGGGAAGGGGGAGAGTACTCTCCGTTTTTGTTAGGGGAGGCGTTAGCGGAGCTGCAACGTTACCTTCCGTCTAACGACGTTGATAACGACTCCGATATATCGGTCCGTGAGTCCGATGTACCGGTCGACGCGTACTCCTGTGACGAGTTCCGTATGTACGAGTTTAAAGTGCGCCGGTGCGCACGCGGGCGCTCCCACGACTGGACTGAGTGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGAAGGGACCCACGTAAGTTCCACTACTCCGGTACTGCGTGTCCTGACTTTCGTAAAGGAAACTGTAAGAGGGGTGACTCCTGTGAGTACGCACATGGTGTATTTGAGTGCTGGCTCCACCCGGCTCGCTATCGTACGCAGCCGTGTAAGGACGGGACGAATTGCCGACGTCGAGTTTGTTTCTTCGCTCACACTCCTGAACAGCTCCGAGTTTTGGCTCAGCAGAGCCCGAGAACGCCTGTGGTGGCAGAAACGCCACCGTCGTACGACGGTTCACCGCTTCGACACGCTCTTGACTCATATTTGGCGAAAGGTTCACCGATTTCTACCCTGTTATCTCCGCCTATTTCGCCACCGTCCGACTCTCCACCCATGTCCCCGAGCAACTCTTCTCTGAGTCGATCGGTGGGTTCGAACTCGATCAACGAGATGGTGGCGTCTTTTCGCCATCTGCAGCTTAATAAGGTGAAATCGGCACCCGCTTCTTGGGCGGTTCAGATGGGTAGTGGGTTTGGTTCGCCGAGGGGTGTCTCGACCCTTCGACCCGTTTTCAGTAGCTTGCCTTCGACCCCAACTCAGACCCCGAATCGGTCCGGCATCGCTTCCTTTGATTTTTGGGACAGGGGGACCCTCTTAGAGGAGCCAGCAATGGAGAGGGTCGAGTCTGGGAAAGAACTACGCGCAAAAATATTTGCGAAACTGAGCAAGGAGAACTCGTTTGAGCGAGTTGACCAGCCCGCTCCAGGTCCAGATGTTGGATGGATTTCAGAACTGGTTCAGTGA 1173 0.5499 MLMIRGGNQPNPTVHVPPWSHFNDQAAGMIFPLPVSGISGNVNGNANGEGEGGEYSPFLLGEALAELQRYLPSNDVDNDSDISVRESDVPVDAYSCDEFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKRGDSCEYAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLAQQSPRTPVVAETPPSYDGSPLRHALDSYLAKGSPISTLLSPPISPPSDSPPMSPSNSSLSRSVGSNSINEMVASFRHLQLNKVKSAPASWAVQMGSGFGSPRGVSTLRPVFSSLPSTPTQTPNRSGIASFDFWDRGTLLEEPAMERVESGKELRAKIFAKLSKENSFERVDQPAPGPDVGWISELVQ* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00990 390 FunFam Zinc finger CCCH domain-containing protein 66 96 164 - -
Eupl10g00990 390 SMART c3hfinal6 138 164 IPR000571 GO:0046872
Eupl10g00990 390 SMART c3hfinal6 173 196 IPR000571 GO:0046872
Eupl10g00990 390 Gene3D - 139 202 - -
Eupl10g00990 390 ProSiteProfiles Zinc finger C3H1-type profile. 139 165 IPR000571 GO:0046872
Eupl10g00990 390 PANTHER UNKEMPT FAMILY MEMBER 63 389 IPR045234 -
Eupl10g00990 390 MobiDBLite consensus disorder prediction 242 266 - -
Eupl10g00990 390 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 163 IPR000571 GO:0046872
Eupl10g00990 390 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00990 Eupl-Chr10 29647008 29648726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00990 88 258 C2H2 Transcription Factor Family AT5G12850 54.545 1.12e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl10g00990 zf-CCCH 1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00990 - - nnu:104588228 562.377