Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00977 ATGAGTAAGAGTCATATAGGTTCCATCAGCAGTTCTGATCTTATTGACGCAAAGCTTGAAGAACATCAGATGTGTGGATCCAAGCAGTGCCCTAGTTGTGGACACAAGCTCGAACGAAAGCCGGACTGGTTAGGTCTTCCAGCAGGAGTGAAATTTGATCCAACTGACCAAGAACTGATAGAGCACCTCGAAGCGAAGGTTGAAGCCAAAGATTCAAAGTCTCATCCTTTGATAGACGAGTTCATCCCTACAATTGAAGGAGAAGATGGGATTTGCTATACTCATCCTGAAAAACTTCCAGGGGTGACAAGAGATGGTCTAAGCAGGCATTTCTTCCACAGACCCTCAAAGGCCTACACAACCGGAACAAGAAAGCGAAGAAAAATTCAAACAGAATGCGACCTACAGGGTGGCGAGACCCGGTGGCACAAAACTGGAAAAACAAGGCCGGTGACTGTGAATGGAAAACAAAAAGGGTGCAAGAAAATTCTAGTCCTCTATACCAACTTCGGAAAACATAGAAAACCCGAAAAAACGAACTGGGTCATGCATCAGTACCACTTAGGCCAGCTGGAGGAAGAAAAAGAAGGAGAGCTCGTCGTCTCGAAGATATTCTATCAGACACAACCCAGACAATGTAATTGGTCAGACAGGAGTGCAACAACCGGTGAAGGAAGCACAGACCCGAATAGTAGAAGAGAAAGTGGTAGTGGGAGCTCTTCTTCTAAAGAAGTTAGTAACCAGAGAGATGAATTGTCTGGAGCTGGGGTTGGAATTTCAAGTTACACTGCCATGGAAATTCAACAAATGAAATCTGACCATTTCAGCTTTGCCCCATTCAGGAAAAGCTTTGATGAGGTGGGAATAGAAGAAGCTTCAAAGGCAAGAGAGGTATCAACAGCTCAAACGTACGAGGAGCATGAAGAGCACGAGCACCAAAGGCCACATCACGTGACTGCCCATGACCAACAACCACAACATCATCATCATCATCATCACCATCATCATCAAGTTGCAACGGCAGCCTTCCACGTCAGCAGGCCTTCACATCCCATCTCTACCATTATCTCTCCTCCACCCCTCCATCACACATCCATTGTTCTTGATGAAGACTCTTATCATGTGTCCAGAATAATCCTCCAAAATGAAAAGTTTCAGCAACAGCAACAGCAACATCAGCAACATGTACAGCAACAGCAACAACAACATCATAAACTGGGAGGAAGGACTGCTTCTGGTTTGGAGGAACTGTTGATGGGTTGCACTTCATCTGACATCAAAGAAGAGTCATCCATCACAAACCCACAAGAGGCAGAATGGCTGAAGTACTCCGGCTTCTGGCCTGACGCTGACCACACGGATCATCATGGGTAG 1374 0.4578 MSKSHIGSISSSDLIDAKLEEHQMCGSKQCPSCGHKLERKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKDSKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTECDLQGGETRWHKTGKTRPVTVNGKQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGQLEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSTDPNSRRESGSGSSSSKEVSNQRDELSGAGVGISSYTAMEIQQMKSDHFSFAPFRKSFDEVGIEEASKAREVSTAQTYEEHEEHEHQRPHHVTAHDQQPQHHHHHHHHHHQVATAAFHVSRPSHPISTIISPPPLHHTSIVLDEDSYHVSRIILQNEKFQQQQQQHQQHVQQQQQQHHKLGGRTASGLEELLMGCTSSDIKEESSITNPQEAEWLKYSGFWPDADHTDHHG* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00977 457 MobiDBLite consensus disorder prediction 300 322 - -
Eupl10g00977 457 MobiDBLite consensus disorder prediction 214 249 - -
Eupl10g00977 457 Gene3D NAC domain 55 211 IPR036093 GO:0003677|GO:0006355
Eupl10g00977 457 MobiDBLite consensus disorder prediction 292 342 - -
Eupl10g00977 457 MobiDBLite consensus disorder prediction 214 254 - -
Eupl10g00977 457 MobiDBLite consensus disorder prediction 323 340 - -
Eupl10g00977 457 ProSiteProfiles NAC domain profile. 46 207 IPR003441 GO:0003677|GO:0006355
Eupl10g00977 457 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 401 IPR044799 GO:0003700
Eupl10g00977 457 Coils Coil 382 402 - -
Eupl10g00977 457 FunFam NAC domain-containing protein 73 55 211 - -
Eupl10g00977 457 SUPERFAMILY NAC domain 42 207 IPR036093 GO:0003677|GO:0006355
Eupl10g00977 457 Pfam No apical meristem (NAM) protein 47 188 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00977 Eupl-Chr10 29437943 29442924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00977 10 454 NAC Transcription Factor Family AT5G56620 52.248 1.73e-134 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl10g00977 NAM 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00977 - - vvi:100261063 749.199