Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00975 ATGGAGAAGAGCTGGTTTGTGGCTTTCCTCATCCTCCAAATCATTCCAACAAAAGATGCTTTTAGTGTTGATGTTGGTGTTAGTGTTGGTGGTGGTAGTGGAGAAGTGTGGATTGGTGGAGGAATCACAAGCCAAAGCCCATCTGGATCTTCAAATTCAAGGCTCAAAGAAGCTTACACAGCCCTCCAAGCATGGAAATCTGCAATTACAGATGATCCATTTAGGATCTTAGACACTTGGGTAGGCTCTGATGTCTGCTCTTATAGAGGAATCTTTTGTGTAGATCCTCAGGAAGACATGTCTTCAAGACCAGGCCTTGTTGCAGGAATAGATCTCAACCATGCCAATCTCCAAGGTTCTCTAGTAAAAGAACTGTCACTCCTCTCAGACATCTCATTCATTCATCTCAACAGTAACAGGTTTACAGGCTCAGCTCCAGACACTTTCAGAGACTTCACATCTCTCTCAGAATTAGACCTCAGTAACAATCACTTCTCAGGCTATTTCCCTTCAGTCACTCTTCTTCTCCCAAATCTCATTTACTTGGACCTCAGATTCAACAATTTCTCAGGACCCATCCCTGAAGAACTCTTCAACAAGAACCTCGATGCAATATTCCTCAACAACAACCAATTTGAAGGCCAAATTCCTCCAAATTTAGGGAATTCACCAGCTTCTGTGATAAACTTGGCTAATAACAGATTTAGTGGGAACATCCCAGCTAGTTTTGGCTACATGGGTCCTTCAGTAAAGGAGGTGTTGTTCCTCAATAACCAGCTAACAGGTTGCATTCCAGAGGGAGTTGGGTTTTTAACAGAGATGGAATTGTTGGATGTGAGCTTCAATTCATTAAAGGGTCACTTGCCGAATTCGATATCTTGTCTGAATGGCATTGAGGTTCTCAATGTTGCTCATAACAAGCTATCTGGGGTTCTTCCTGATGTAGTTTGTTCTATGAGAAGCCTTGTTAATCTTACTGTTTCTTACAATTTCTTTTCTGGGTTTAGCCAGGAATGCAGCAAGTTGTTTTTCAGGAATGTGGGTTTCGATTTCTCAGTGAATTGTATCCCGGGTAGAGACATGCAGAGGCCTCCACCAGAGTGTTCTATGATACCAGGAGGTAGCATCAATTGCTTGAGAATTCCTTCAACGAGGCCTTTGATTTGTGGTTCAGTGGACCAAACACCAGGGACTACTATTCCTAGCCCTTCTCCCACGTCTTAG 1224 0.4297 MEKSWFVAFLILQIIPTKDAFSVDVGVSVGGGSGEVWIGGGITSQSPSGSSNSRLKEAYTALQAWKSAITDDPFRILDTWVGSDVCSYRGIFCVDPQEDMSSRPGLVAGIDLNHANLQGSLVKELSLLSDISFIHLNSNRFTGSAPDTFRDFTSLSELDLSNNHFSGYFPSVTLLLPNLIYLDLRFNNFSGPIPEELFNKNLDAIFLNNNQFEGQIPPNLGNSPASVINLANNRFSGNIPASFGYMGPSVKEVLFLNNQLTGCIPEGVGFLTEMELLDVSFNSLKGHLPNSISCLNGIEVLNVAHNKLSGVLPDVVCSMRSLVNLTVSYNFFSGFSQECSKLFFRNVGFDFSVNCIPGRDMQRPPPECSMIPGGSINCLRIPSTRPLICGSVDQTPGTTIPSPSPTS* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00975 407 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 45 391 - -
Eupl10g00975 407 SUPERFAMILY L domain-like 59 341 - -
Eupl10g00975 407 Gene3D Ribonuclease Inhibitor 224 356 IPR032675 -
Eupl10g00975 407 Gene3D Ribonuclease Inhibitor 56 223 IPR032675 -
Eupl10g00975 407 Pfam Leucine rich repeat 134 189 IPR001611 GO:0005515
Eupl10g00975 407 FunFam Leucine-rich repeat extensin-like protein 1 59 222 - -
Eupl10g00975 407 Pfam Leucine rich repeat N-terminal domain 57 93 IPR013210 -
Eupl10g00975 407 SMART LRR_typ_2 128 151 IPR003591 -
Eupl10g00975 407 SMART LRR_typ_2 176 200 IPR003591 -
Eupl10g00975 407 SMART LRR_typ_2 152 175 IPR003591 -
Eupl10g00975 407 SMART LRR_typ_2 271 295 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00975 Eupl-Chr10 29419801 29421141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00975 51 378 Leucine-rich Repeat extension Gene Families AT3G24480 49.544 4.23e-103 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00975 - - nnu:104604462 632.098