Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00939 ATGAATCATTCAGAAAGTATGGATATTTTCCGCCAAGAGGAGAATCAGATTGCAAGAGAGAGAGCCCAAATTCTGGTAAGTTTGAATAATGGGTTCTCTTCAAATCGTTCAGGGCACTTGGAGAGATTGGAAAGGAAAGAAGTACAACTTGCGAGGTTGCAAGCGAGAACAGTGAGGCTGGCGAGGTTAAGAGGCGGTGGTGCAACAGGTGATAATAAATGGGCATTGCTACTGACGGAATTAGCGATCATGGGAGAGCTTGCGAAGGAGTTGGAGCCGGCACTAGAAGGATTAACAGAGGTAGTCATCATGGATGGTGGGGATGTTTGTGCAGTTTGTCAAGAAGAGATGGAGGTCGGAGATATTGCAAGAGCAATGGGTTGTTCGCATACTTTTCACTTGGGTTGTGTCTTAGAGTGGGTGAGACGAAAGGCTACTTGTCCTCTCTGCAGATATGAGATACCCATCAATGATGCCAAAAGAAGAAAAGTAATAACACTGTTAGATGATTAG 513 0.4464 MNHSESMDIFRQEENQIARERAQILVSLNNGFSSNRSGHLERLERKEVQLARLQARTVRLARLRGGGATGDNKWALLLTELAIMGELAKELEPALEGLTEVVIMDGGDVCAVCQEEMEVGDIARAMGCSHTFHLGCVLEWVRRKATCPLCRYEIPINDAKRRKVITLLDD* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00939 170 SUPERFAMILY RING/U-box 103 157 - -
Eupl10g00939 170 Coils Coil 36 63 - -
Eupl10g00939 170 ProSiteProfiles Zinc finger RING-type profile. 110 151 IPR001841 -
Eupl10g00939 170 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 151 - -
Eupl10g00939 170 CDD RING-H2_PA-TM-RING 109 151 - -
Eupl10g00939 170 SMART ring_2 110 150 IPR001841 -
Eupl10g00939 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 166 IPR013083 -
Eupl10g00939 170 Pfam Ring finger domain 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00939 Eupl-Chr10 28959930 28960663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00939 88 155 C3H Transcription Factor Family AT1G14200 44.444 4.33e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00939 - - nnu:104611364 121.709