Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00938 ATGAATCACTCAGTAAGTATGGATATTTTCCATGAAGAGGAGCTTCAAATTGCAAGAGAGAGAGCCCAAATTCTTGCAAGTTTGAGTGACGGGTTCTCTTCAAATCGTTCAAGGAACTCTGTAAGATTGGATACGGAAGAACTACAACTTGCGAGGTTGCAAGCGAGAACGGTGAGGCTAGCGAGGTTGAGAGCTGGTGCAACAGGCGATAATAAATCGACATTGCTACTCACGGAATTAGCGATCATGGTCGAACTTGCCAAGGAGTTATCGGGAATAATCGAATCGGAACTTGAAGGATTAACAGAGGTAGTCATCATGGATGGTGGGGATGTCTGTGCAGTTTGTCATGAAGAGATGAACGTCGGAGATGATGCCAGAGCAATGGGTTGTTCGCATACTTTTCACTTGGGTTGTATCTTAGAGTGGGTGAGACATAAGGCTACTTGTCCTCTCTGCAGATATGAGATGTCCATTAATGGTGCCAAAAGAAGAATAGTACTGTTAGATGATTAG 516 0.438 MNHSVSMDIFHEEELQIARERAQILASLSDGFSSNRSRNSVRLDTEELQLARLQARTVRLARLRAGATGDNKSTLLLTELAIMVELAKELSGIIESELEGLTEVVIMDGGDVCAVCHEEMNVGDDARAMGCSHTFHLGCILEWVRHKATCPLCRYEMSINGAKRRIVLLDD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00938 171 CDD RING-H2_PA-TM-RING 112 154 - -
Eupl10g00938 171 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 37 154 - -
Eupl10g00938 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 166 IPR013083 -
Eupl10g00938 171 SUPERFAMILY RING/U-box 102 159 - -
Eupl10g00938 171 SMART ring_2 113 153 IPR001841 -
Eupl10g00938 171 Pfam Ring finger domain 112 154 IPR001841 -
Eupl10g00938 171 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00938 Eupl-Chr10 28957342 28958039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00938 91 158 C3H Transcription Factor Family AT1G14200 44.444 2.40e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00938 - - nnu:104611364 133.265