Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00924 ATGGAAGCCCCGGAGTTCTTCCACAGTGGCTACTACCGTGCCGCAAATCCCCAATTCACGCCAGAAAAACGACACACTGATACTAAGCCCAGCGACCATTTCATCATCGAAGACCTCCTCGATTTTTCCAACGAAGACGCTGTCATTAATGATGGCATTTTTGACAGTATCACCGGAAATTCCACTGATTCCTCCACCGTCACTGTCGTCGATAGCTGTAATTCCTCTTTTTCAGGCTGCGATAATCCTCATTTTTCTGGTGACCTGGACTGCCGGAGTTTTCCCGATGCTCAATTCTCTGGTGAACTTTGCGTTCCGTACGACGAATTAGCTGAGCTGGAATGGCTTTCAAATTTCGTGGAAGAATCGTTCTCGAGCGATGATTTCCAGAAGCTCCAACTGATTTCCGGGGTGAAAGCCTGCACCAATGAGGCATCCAAAACGCGCGAACTCCAACCCGAAATTAACCGGAATAGCTCGATATTCCGACCAGAGATTTCAGTTCCCGGCAAAGCTCGCAGCAAGCGCTCACGGGCCGCACACTGCAACTGGTCGTCACGCCTCCTCGTTTTATCCCCGACGACATCATCGTCGGAATCTGACGTCACGTCGAATTTCGGCAAGAAAACAACGAAGGTGACCCTGAAGAAGAAAGAAGCTTGTGACATTGCAACCGACAGTGGCGACGGCCGCAAGTGCCTGCATTGCGCCACTGACAAGACGCCACAGTGGCGGACCGGGCCAATGGGTCCTAAGACCCTATGTAATGCATGTGGGGTTCGATACAAATCGGGCCGGCTCGTACCTGAATACCGACCCGCTGCTAGCCCGACATTTATGCTTACGCAACACTCCAATTCGCACCGGAAAGTTCTTGAGCTTCGACGGCAGAAGGAGTTCCAGAGTCCGCACCAGCAACAGTTTCTGCACCCGAACACCGTGTTCGACGTATCAAGCGGTGACGATTACCTGATCCATCACCACAACGGGCCCGATTTCAAGCAGATAATCTAA 1014 0.5168 MEAPEFFHSGYYRAANPQFTPEKRHTDTKPSDHFIIEDLLDFSNEDAVINDGIFDSITGNSTDSSTVTVVDSCNSSFSGCDNPHFSGDLDCRSFPDAQFSGELCVPYDELAELEWLSNFVEESFSSDDFQKLQLISGVKACTNEASKTRELQPEINRNSSIFRPEISVPGKARSKRSRAAHCNWSSRLLVLSPTTSSSESDVTSNFGKKTTKVTLKKKEACDIATDSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTQHSNSHRKVLELRRQKEFQSPHQQQFLHPNTVFDVSSGDDYLIHHHNGPDFKQII* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00924 337 Gene3D - 227 277 IPR013088 GO:0006355|GO:0008270
Eupl10g00924 337 FunFam GATA transcription factor 224 309 - -
Eupl10g00924 337 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Eupl10g00924 337 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Eupl10g00924 337 PANTHER GATA TRANSCRIPTION FACTOR 24 303 - -
Eupl10g00924 337 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Eupl10g00924 337 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Eupl10g00924 337 PIRSF Txn_fac_GATA_plant 14 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Eupl10g00924 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 290 - -
Eupl10g00924 337 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00924 Eupl-Chr10 28786054 28787615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00924 34 337 C2C2-Gata Transcription Factor Family AT5G25830 51.343 3.58e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl10g00924 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00924 - - nnu:104592082 563.148