Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00878 ATGGAGAGGATTGTCGGAGATAAGTACAAGCTAGGGAGGAAGATCGGTAGTGGATCCTTTGGAGAAATCTATCTCGCAACGCATATCGATACACATGAGATCCTTGCAGTTAAGATCGAGAACAGTAAGACAAAACATCCACAACTGCTTTATGAAGCCAAGCTCTATAATATTCTTCAGGGAGGAACTGGTATTGCAAGCATAAAATGGTGTGGGGTTGACGGTGAGGACAATGTTCTTGTCCTTGACTTGTTGGGACCAAGTCTCGAAGATCTGTTTGTCTACTGTGGAAGGAAGTTCTCACTGAAGACAGTCTTAATGTTGGCTGATCAGATGATTACGAGAATTGAGTATGTGCACTCTAAAGGGTTTTTGCATAGGGACATTAAACCAGATAACTTTCTCATGGGTCTTGGTCGGAAAGCGAATCAGGTCTACATCATTGATTTTGGACTTGCAAAAAGATATCGGGACTCTACGACCAATCGCCATATTCCTTACAGGGAGAACAAAAACTTAACGGGGACTGCACGTTATGCAAGTTGCAATACTCATTTGGGTATTGAGCAAAGTCGGCGAGATGATTTGGAGTCTCTTGGCTACGTTCTTCTATATTTTTTGAGAGGAAGCCTTCCATGGCAGGGTTTAAAAGCTGCCACAAAGAAGCAAAAATATGACAAGATATGTGAGAAGAAGTTATCGACCCCCATTGAAGTTTTGTGCAAGTCTCATCCGGTGGCGTTTGCATCATACTTCCATTATTGCCACTCTTTGACATTTGATCAACGGCCTGATTATGGATTCTTGAAGCGCCTGTTTCGTGACTTGTTTACTCGGGAAGGATGTGAGTTTGATTATATATTTGACTGGACCATCCTAAAGTACCAGCAAGCACAAAGGACAAAAACTCAGCCTCGATTATCACCAGTTTCTGGAGTGACCAGCAGTCGAGCAATGCCAATGGATGTTGACAAGCATCAAGGAGGAAATGATGCTTCTTATCCAGCTGAGGTGACAGAACGCATTGCATCAAGTAATGCTGCTCGCCCTGGAATTCGCATGCAATTTAAATCTGCAACAGACAAGAATTTGAGTTCAGACAATCCTGTTGAGAAGACTACATTGAGCCATTTTTCTGAGAAAGTGCACATGCCATCTAGTTCATTTACTCTAGCTGGTGCCTCCAAGAGAAATGCCTCAAAAGCCATGTTGCCGCCTGAAACTGCAAACCACAGTCATGGACTGGGCAGCAAAATTGGTCATTCAAGCAGCTGGATTTCTTCATTACAACGCAATTCGTCTGCCAAATGA 1311 0.431 MERIVGDKYKLGRKIGSGSFGEIYLATHIDTHEILAVKIENSKTKHPQLLYEAKLYNILQGGTGIASIKWCGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVAFASYFHYCHSLTFDQRPDYGFLKRLFRDLFTREGCEFDYIFDWTILKYQQAQRTKTQPRLSPVSGVTSSRAMPMDVDKHQGGNDASYPAEVTERIASSNAARPGIRMQFKSATDKNLSSDNPVEKTTLSHFSEKVHMPSSSFTLAGASKRNASKAMLPPETANHSHGLGSKIGHSSSWISSLQRNSSAK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00878 436 MobiDBLite consensus disorder prediction 415 436 - -
Eupl10g00878 436 Gene3D Transferase(Phosphotransferase) domain 1 1 332 - -
Eupl10g00878 436 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Eupl10g00878 436 PANTHER CASEIN KINASE-RELATED 7 346 - -
Eupl10g00878 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Eupl10g00878 436 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00878 436 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Eupl10g00878 436 MobiDBLite consensus disorder prediction 304 333 - -
Eupl10g00878 436 MobiDBLite consensus disorder prediction 397 436 - -
Eupl10g00878 436 CDD STKc_CK1_delta_epsilon 8 281 - -
Eupl10g00878 436 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00878 436 FunFam Casein kinase I isoform delta-like 1 340 - -
Eupl10g00878 436 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00878 Eupl-Chr10 28311859 28317466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00878 4 236 AGC Kinase Gene Family AT3G08720 25.210 1.90e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Eupl10g00878 Pkinase 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00878 K08960 - nnu:104592123 768.459