Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00868 ATGTCTACGCCCTTGGAACATGATTACATAGGCTTATCAGAGGTTTCTTCAATGGAAAGCTCTGAGAAGATTTCTTCCTCCTCTACTGTTTCCACAGAGGAGGATGTGAAGAAGAATGGTCTCAACCTCAAGGAAACTGAGTTGAGGCTTGGATTACCTGGTTCCGAGTCTCCTGAGAGGAAAAGAGGAGGTGGGGTTTCCCTTTTGGGAAGGGGGACTGACGATAAGAACGGGTATCCACTTGGTGTACTGAATTTTGTGTCTGGAGCGAAGAGGGGTTTTTCTGACGCCATTGATGGTTCTGGGAAATGGGTTTTCTCTGGGAGTGGTGGATCTGAGGTTGATTCGGGGAAAGGAGCTGTTTTGTTCTCTCCCAGAGGTGGGAGTGGTGGGAAGCCACTTGGTGGGTTGGAGAATAGTACGCAGCAGTCGGGTTCTGCTGCGGCTACAATGAAAGACGTCGTTCCACCGTCGCCTAAGCCGGTGCAGGAGAAGAAGCCTCAGCCTTCTGCTGCAAATGACCATGCTCCTCCTGCGAAGGCACAGGTTGTAGGATGGCCACCAATTCGATCCTTCCGAAAGAATACCATGGCTACTAATCCAGCAAAGAACAACGATGATGCCGAAGGCAAGTCAGGATCAGGGTGTCTGTATGTGAAGGTTAGCATGGATGGTGCTCCATACCTGAGGAAGGTTGACCTCAAAACCTACTCCAACTACATGGAACTCTCGTCAGCACTTGAGAAGATGTTCAGCTGCTTTACCATTGGGCAGTGTGCTTCTCATGGAGTCCCAGGCCGAGATGGGCTGAGCGAGAGTCGATTGATGGATCTTCTCCATGGTTCTGAATATGTGCTTACATACGAGGACAAGGACGGTGATTGGATGCTCGTTGGTGATGTACCCTGGGAGATGTTCACTGATTCTTGTAAGAGGCTGAGGATAATGAAGGGTTCAGAGGCAATTGGCTTAGCGCCAAGGGCCATGGAGAAGTGCAAGAACCGAAACTAG 1011 0.5005 MSTPLEHDYIGLSEVSSMESSEKISSSSTVSTEEDVKKNGLNLKETELRLGLPGSESPERKRGGGVSLLGRGTDDKNGYPLGVLNFVSGAKRGFSDAIDGSGKWVFSGSGGSEVDSGKGAVLFSPRGGSGGKPLGGLENSTQQSGSAAATMKDVVPPSPKPVQEKKPQPSAANDHAPPAKAQVVGWPPIRSFRKNTMATNPAKNNDDAEGKSGSGCLYVKVSMDGAPYLRKVDLKTYSNYMELSSALEKMFSCFTIGQCASHGVPGRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKGSEAIGLAPRAMEKCKNRN* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00868 336 ProSiteProfiles PB1 domain profile. 216 318 IPR000270 GO:0005515
Eupl10g00868 336 MobiDBLite consensus disorder prediction 1 79 - -
Eupl10g00868 336 MobiDBLite consensus disorder prediction 14 36 - -
Eupl10g00868 336 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 323 IPR003311 GO:0005634|GO:0006355
Eupl10g00868 336 MobiDBLite consensus disorder prediction 109 187 - -
Eupl10g00868 336 SUPERFAMILY CAD & PB1 domains 213 317 - -
Eupl10g00868 336 MobiDBLite consensus disorder prediction 135 149 - -
Eupl10g00868 336 FunFam Auxin-responsive protein 211 328 - -
Eupl10g00868 336 Gene3D - 211 329 - -
Eupl10g00868 336 Pfam AUX/IAA family 45 327 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00868 Eupl-Chr10 28238630 28243200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00868 207 326 B3 DNA Binding Superfamily AT5G62000 29.167 6.43e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl10g00868 AUX_IAA 7.1e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00868 K14484 - nnu:104595142 550.051