Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00862 ATGACCACCACCTCGGAGAGAATTCTCCACCACACTACCACCTTCATCACTGAAACTCTCTCTCAATCCGATCACCGGCACCGCCTCTTCTCCACCTTTCGCCAAAAAATCCAGTCCTCTGACCAAATTACCCTTAAATCACTTAGCCTAGCTGCTGATACCCTCGAAAACGCCATCTCCACCACCAGTCCGACCACTCGATCTTCTTCTCTCATCCTCGCCGAAAAGCTCCTCCTCACTTACCCTGAAAATGCCTTCTCAGTTTTTCTTCTCTCCCTAATTTACAGTCTCCGCCACCGACCCATTGATGCGGGTCTCTGTCTCCTTGATGTTTTCTTCTTTGATCCTTCGTCGGCTAGATCGGAGATCGCTCCAGTTCTCTTCGAGGAGCTCTTTCTCCTTCACATCCTCCCTGTTCTCCAATGGTTCAACGATAAGAAATCAAGTATACTGTCGTCGATACCGCCGGATCTGAATCGTGATGGGGATCAAAGGTTCAGATCTAACACGAGGTTGCTGTCGAGGATGAGTGAGGATCAAGCTGTTGAGCTTAAGGAGCTGGAGAGGGACTATGAAGATGCCCTTAATGAGAATTGTAAGGTTTTTGTTGGGTATTTGAAGGAGGTACTGGAAGATAGAGATGGAATTCGATCGATTTCTCCACCACCGTTGATCTTGACGAGGATCTGCGAAGGTGAAAATTTGGGTTTTGATGAGGAGGAGAAGATCAAGACGGATGATACTGGATTGAGAAACGGACGGTATAATCCAATATGGGCTGAAGGAGAAGATAGATCAGTTGAATTCTATAGGAGCAGCAGCAGCAGCAGCAACAACAGCAAGTCAAAGTCTTCACCTGTATATCCTCAAAGAGTTTCCCCACATTTCCTCACTAACCAAAGATCTACCAGAAGATTGAAAACATCGTCCAATTCAAATTCTGATTCTGAATCCGAGTCATCTTCGGATAACATCTCGGATGCTTCTTCTTCTTCTTCAGAATCCGAATCCGAAATAGAGGAAAAAAACAGAGAAATGGCATTGTTTAAGCCTAAACAGACCCAATTCCAAAAACAGAAGCAACCCATATCTGCACAATCCAGCTGTTCTCCAGATCCTCTCATGGAAGATTCTGATAACCTGCCTGGTGGTGGAAAGCATACCCCTCCTAAGGATTTTGTCTGCCCCATAACTAGTCACCTCTTTGTCGACCCAGTGACACTCGAGACAGGTCAGACTTATGAGCGCAGAGCGATCCAAGAATGGCTCGAGAGGGGGAATTCTACATGCCCGATCACTCGACAGAATCTGCAGAGCACCCAATTGCCCAAGACAAACTATGTGCTCAAACGCCTTATTGCAAGTTGGCAAGAACAGAACCCTGGTTCTATCCAAATCCAATCGGAGAATTCACTTCCAAAGAGTGCCTCGGGGTTAAATTCAGTGAAGCCTTTGTCTTCTCCTACGAGTGTAATCAGCCAAGCAACCATTGATGGTACTATTAGTGAGCTACGCCTAGCAATCACCAACCTCTGTATGTCGGAAATTCTGAATGAGTCCGAAACAGCCATCCTCCGAATTGAACAGTTTTGGCGGGAAGCTAACGTGGAACCTGAGATTCAAACCATGCTCTCCAAACCTGCTGTTGTCAATGGGTTTGTCGAGATTCTTTTCAATTCTGTGGATCCTCAGGTGCTGAGGGCTACAGTGTTTCTCCTCACTGAGCTGGGATCAAGGGAAAAAGTTGTGATCCAGACACTTACCAGAGTGGACTCGGATGTCGATTGTATCATTGCTCTTTTCAAGAAGGGGCTAGTGGAGGCTGTCGTATTGATTTATCTGTTGAGACCTACTGTAGCGAACCTTGTTGAGATGGACATGGTCCAATCCCTCCTTATGGTTATTATGAAGAAAGAGGAGGATTTGTTTGAGATGTGCCTGAGGCTGAAAACGGCTTCGGTTCTTCTGTTGGGGCAGATACTTGGAAGTGGAGAGGAAAGCATTGTATCTACTGTTGCTCGTTCTGTGGTTTCTTCACAAGCAATTGAAAATGTTGTTGGGAGCTTGGAAGCTGACTGGGCAGAGGAGAGGATTGCAGCAGTTGGGATCTTGTTGAGATGTATGCAGGAGAATGGAAAGTGCAGAAATGCTATCGCTGATAAGGCCGAACTCGCTCCTGTTTTGGAGAGCTTTGTGGGGGCAAACGATGGAGAACGGTTCGAAATAGTAACTTTTCTATCTGAATTAGTTAAGCTAAACAGGAGGTCATTCAATGAGCAGCTTCTTCATATCATAAAGGATGAAGGTGCTTTCAGTACTATGCATACCCTCCTCATTTATCTACAGACAGCCCTCCAGGATCAATGCCCTGTTGTCGCTGGTCTCCTTCTTCAACTTGATCTTCTGGCTGAGCCAAGAAAGATGAGCATGTACCGCGAAGAGGCCATAGATGCTCTTATATCATGCCTCAGGAATTCAGATTTCCCTGGCACTCAAATAACAGCTGCAGAGACAATTTTGGCCCTACAGGGAAGGTTCTCTTCCTCCGGAAAGCCCCTTGCTCGAGATTTTCTTCTAAAACGTGCAGGTCTCGGCAGGACCCACAAAAATCTAGTTCGAGCGGAGGAGCTTGGCAACATTACTGGCAGGTCCGAGGAGGATTTGGAAGAAGAGAAGGTTGCCGATGAGTGGGAAAGAAAAATGGCGTTTGTTCTAGTCAGTCACGAGTTTGGTCTACTGTTTGAAGCTTTAGCAGAAGGCCTGAAGAGCAGATATGCGGAATTATCCTCTGCATGTTTTGTGTCTGCCACATGGCTTACACACATGCTTACTGTTCTACCAGACACAGGAATACGAGGAGCAGCTCGGGTCTGCTTGCTCAAGCAGTTCGTCTCAATCTTCAAGTCTGCAAGAGATGCTGAAGACAAAGCTCTTGCAATGCTTGCTCTTAACTGCTTTGTCCATGATCCTGAGGGACTACATGATTTAACTGTCAACATGAAGGACATGCTGAAAGGTCTTAGAGAGCTCAAGAAATCCTCCAGCTTAGCATCAGATATACTGAAAGTTTTCTCAGAAGGGCAGGACAGTAGTGCTGACCTGTGGAATCATAAAGAGTTGACTCAAGTGGATTGCAATGCCAATGGGGAAGTGCTGGCAATAATTTGCTTCAAGGATAAGATATTCTCTGGCCATTCAGATGGAACACTAAAGGTATGGAGCCGTAAAGGTAGCGTTCTTCATCTTATCCAAGAAACTCGAGAACATACCAAGGCACTCACTAGCTTGGCAATTTTACAATCTGGGGAGAGACTATACAGCGGCTCACTTGACAGAACCACAAGGGTTTGGGCTATTGGGCATGAAGTAATCCATTGTGTACAAGTTCATGATATGAAAGACCAGGTTCATAGTATAGTAGTTGCAAATACCATTTCATGCTTCATTCCATATGGAGCTGGTGTCAAGGTTCATTCATGGACTGGAGAATCCAAGTTGCTCAATCCTAGCAAATATGTCAAGTGCTTGGCGCTTGTACAGGGGAAACTATACTGTGGGTGCAACGATAGTAGTATTCAGGAAATTGATCTAGCTACTGGAACACTGAGTACAATACAAACTGGAAGTAGAAAATTACTAGGAAAAGCAAATCCAATCTATGCAATGCAAGTTTCCGATGGACTCATCTACGCAACCAGCAGTTCTTTAGATGGAGCAGCAGTAAAGATATGGAGTGCTTCAAATTTAAGTATGGTTGGATCACTGCCATCTACCTTGGAAGTGCGAACCATGGCTGTAAGCTCAGAGCTGATTTATTTGGGGTGCAAGATGGGGACTGTCGAAGTATGGTCCAAGGAGAAGCATACCAGAGTAGAAACACTACAAACTGGAACCAACGGGAAGGTGCTCTGCATGTCCATTGATGGGGACGAAGTTCTAGTGATCGGAACTTCCGAAGGCCGGATTCAGGTGACTATTTTCATCCCAAAACTAAAATAA 3999 0.4551 MTTTSERILHHTTTFITETLSQSDHRHRLFSTFRQKIQSSDQITLKSLSLAADTLENAISTTSPTTRSSSLILAEKLLLTYPENAFSVFLLSLIYSLRHRPIDAGLCLLDVFFFDPSSARSEIAPVLFEELFLLHILPVLQWFNDKKSSILSSIPPDLNRDGDQRFRSNTRLLSRMSEDQAVELKELERDYEDALNENCKVFVGYLKEVLEDRDGIRSISPPPLILTRICEGENLGFDEEEKIKTDDTGLRNGRYNPIWAEGEDRSVEFYRSSSSSSNNSKSKSSPVYPQRVSPHFLTNQRSTRRLKTSSNSNSDSESESSSDNISDASSSSSESESEIEEKNREMALFKPKQTQFQKQKQPISAQSSCSPDPLMEDSDNLPGGGKHTPPKDFVCPITSHLFVDPVTLETGQTYERRAIQEWLERGNSTCPITRQNLQSTQLPKTNYVLKRLIASWQEQNPGSIQIQSENSLPKSASGLNSVKPLSSPTSVISQATIDGTISELRLAITNLCMSEILNESETAILRIEQFWREANVEPEIQTMLSKPAVVNGFVEILFNSVDPQVLRATVFLLTELGSREKVVIQTLTRVDSDVDCIIALFKKGLVEAVVLIYLLRPTVANLVEMDMVQSLLMVIMKKEEDLFEMCLRLKTASVLLLGQILGSGEESIVSTVARSVVSSQAIENVVGSLEADWAEERIAAVGILLRCMQENGKCRNAIADKAELAPVLESFVGANDGERFEIVTFLSELVKLNRRSFNEQLLHIIKDEGAFSTMHTLLIYLQTALQDQCPVVAGLLLQLDLLAEPRKMSMYREEAIDALISCLRNSDFPGTQITAAETILALQGRFSSSGKPLARDFLLKRAGLGRTHKNLVRAEELGNITGRSEEDLEEEKVADEWERKMAFVLVSHEFGLLFEALAEGLKSRYAELSSACFVSATWLTHMLTVLPDTGIRGAARVCLLKQFVSIFKSARDAEDKALAMLALNCFVHDPEGLHDLTVNMKDMLKGLRELKKSSSLASDILKVFSEGQDSSADLWNHKELTQVDCNANGEVLAIICFKDKIFSGHSDGTLKVWSRKGSVLHLIQETREHTKALTSLAILQSGERLYSGSLDRTTRVWAIGHEVIHCVQVHDMKDQVHSIVVANTISCFIPYGAGVKVHSWTGESKLLNPSKYVKCLALVQGKLYCGCNDSSIQEIDLATGTLSTIQTGSRKLLGKANPIYAMQVSDGLIYATSSSLDGAAVKIWSASNLSMVGSLPSTLEVRTMAVSSELIYLGCKMGTVEVWSKEKHTRVETLQTGTNGKVLCMSIDGDEVLVIGTSEGRIQVTIFIPKLK* 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00862 1332 MobiDBLite consensus disorder prediction 270 333 - -
Eupl10g00862 1332 SMART Ubox_2 392 456 IPR003613 GO:0004842|GO:0016567
Eupl10g00862 1332 ProSiteProfiles U-box domain profile. 388 463 IPR003613 GO:0004842|GO:0016567
Eupl10g00862 1332 SUPERFAMILY RING/U-box 387 461 - -
Eupl10g00862 1332 Pfam U-box domain 390 460 IPR003613 GO:0004842|GO:0016567
Eupl10g00862 1332 MobiDBLite consensus disorder prediction 270 390 - -
Eupl10g00862 1332 SMART WD40_4 1209 1245 IPR001680 GO:0005515
Eupl10g00862 1332 SMART WD40_4 1287 1326 IPR001680 GO:0005515
Eupl10g00862 1332 SMART WD40_4 1076 1118 IPR001680 GO:0005515
Eupl10g00862 1332 SMART WD40_4 1036 1074 IPR001680 GO:0005515
Eupl10g00862 1332 SMART WD40_4 1153 1196 IPR001680 GO:0005515
Eupl10g00862 1332 SMART WD40_4 1248 1284 IPR001680 GO:0005515
Eupl10g00862 1332 Gene3D - 512 845 IPR011989 -
Eupl10g00862 1332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1086 1117 - -
Eupl10g00862 1332 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1325 - -
Eupl10g00862 1332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 463 IPR013083 -
Eupl10g00862 1332 CDD RING-Ubox_PUB 390 442 IPR045210 -
Eupl10g00862 1332 Gene3D - 1153 1329 IPR015943 GO:0005515
Eupl10g00862 1332 MobiDBLite consensus disorder prediction 350 374 - -
Eupl10g00862 1332 Gene3D - 988 1144 IPR015943 GO:0005515
Eupl10g00862 1332 SUPERFAMILY WD40 repeat-like 1041 1324 IPR036322 GO:0005515
Eupl10g00862 1332 SUPERFAMILY ARM repeat 537 839 IPR016024 -
Eupl10g00862 1332 Coils Coil 177 197 - -
Eupl10g00862 1332 ProSiteProfiles Trp-Asp (WD) repeats profile. 1086 1117 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00862 Eupl-Chr10 28135865 28145399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00862 390 460 U-box Gene Family AT3G46510 54.930 1.78e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00862 - - csin:114279327 1800.79