Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00852 ATGGAGCAAAGAGATGGGGGGGATTTCCCGCCGAAAAATCTCCAATCGGCTACGATGACAACGGGGATGGTAACGGCGACCTCAGATTTCCCGCTGAAGAAGCTCGCCAGGCAGCTGGATTTCACGGTGTTCTGCAGCGCATCAACGGGTATTGTCTTGCCGGAGCACCCGCAGCAGCCACAGCCGCAGCTGCAGCTGCAGCTCGTGCCGCAGCCACAGCCGCCTCCGCCTCCGCCTCCTCGTCCTTTGTTACCGGCGGTAAAGCCAGAGTCCCCAAGATCACGACCAAGGCCTAGTGTTGAAGTGAAAGATGGTACTCCGAAGAAACAAAAACAATGTAATTGCAAACACTCACGATGCTTGAAGTTGTATTGTGAGTGCTTTGCTTCTGGAATTTACTGTGAGGGGTGTAACTGTGCAAACTGTTATAATAACAGTGAGAATGAGGCTTCTAGGCAAGAAGCTATAGAAGCTACTTTAGAGCGTAATCCAAATGCATTCCGGCCAAAGATCGCTAGTAGTCCACATGGAACTCGGGATACTAGGGAGGAAGTAGGAGATGTCCCAATGGTGGGAAAGCACAACAAGGGATGTCACTGCAAGAAATCAGGATGCCTCAAGAAGTATTGTGAGTGCTTCCAAGCCAACATTCTGTGCTCTGAAAATTGTAAATGCATCGACTGCAAAAACTTTGAAGGTAGTGAAGAGAGACGAGCTCTCTTCCATGGAGACCATGGTAATGCCCTCTACATCCAGCAGGTAGCCGCCAATGCGGCAATTACTGGGGCCATTGGATCCTCTGGCTATGGCTCCCCTCCAGGATCCAAGAAGAGAAAAAATCAGGACCTATTCTTCGGGACAATGGTCAAGGATCCACTCGTTCACAGGCTTGCTCAATTCCCTCAGGTGAATCATCTAAAATCTTCTACACCCTCTTCTTCTTTGTCGTCCATACCTGTTGCTCGTGTTGTTAACCCTGCAGCATTGGGCTCTTCAAAATTCACATATAGGTCTCTATTAGCAGACATTCTCCAACCACAGGATGTGAACGAGCTTTGCTCAGTTTTGGTGGTAGTATCAGGAGAAGCTGCAAAGACACTTGCAGAGAAGAAAGGCACAATAGAAAAGCAAGCAGAGAGAGAAGAACAGATGGAGAGCTCCCTAGCTTCTTCGACTCAAGACGGAGAAGCTAGCCAGAAAGAATCTGTTGTTCAGAAGGTTCTGGCTGATGACCGTTCAAGTGGGAACCAGGCTGATAAAATGGGCATGGATGATTCTGGATCAGATGGTTCTGACATGCAGAGCAAAAGGCCGATGTCTCCTGGAACGCTAGCACTGATGTGCGATGAGCAAGACACAATGTTCATGGCAGCTGCAGCCCCAAATGGGGCCTTGGGCCGTGGCAGCAACATGCCTCTGCGCTTGCCACCTGGGCATGGCATGACAGAGGTCTGTGCGGAGCAAGAAAGGCTTGTCTTGACAGGGTTCCGGGATTATCTACGGAGCCTCGTTACTTATGGAACAATAAAAGAAAAAAGTTATTCTTCGTTGGGCACAAAAACAGAATCAGGGAGTCAACCAATACCCGTTGGCAATGGCATTGTAAGAACTCTTGTTACACCTGCTGAGATATCTCAGACGATGAGTCCAGTCACTGTCACATCTAATAACAGTCTGCCTCTGAAGGTTGGACGCCCCGCTGAAAATGGAGATATAAAACCAAAGATTGAGAATGAGATGTAA 1743 0.4882 MEQRDGGDFPPKNLQSATMTTGMVTATSDFPLKKLARQLDFTVFCSASTGIVLPEHPQQPQPQLQLQLVPQPQPPPPPPPRPLLPAVKPESPRSRPRPSVEVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCEGCNCANCYNNSENEASRQEAIEATLERNPNAFRPKIASSPHGTRDTREEVGDVPMVGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFEGSEERRALFHGDHGNALYIQQVAANAAITGAIGSSGYGSPPGSKKRKNQDLFFGTMVKDPLVHRLAQFPQVNHLKSSTPSSSLSSIPVARVVNPAALGSSKFTYRSLLADILQPQDVNELCSVLVVVSGEAAKTLAEKKGTIEKQAEREEQMESSLASSTQDGEASQKESVVQKVLADDRSSGNQADKMGMDDSGSDGSDMQSKRPMSPGTLALMCDEQDTMFMAAAAPNGALGRGSNMPLRLPPGHGMTEVCAEQERLVLTGFRDYLRSLVTYGTIKEKSYSSLGTKTESGSQPIPVGNGIVRTLVTPAEISQTMSPVTVTSNNSLPLKVGRPAENGDIKPKIENEM* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00852 580 Coils Coil 143 163 - -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 1 20 - -
Eupl10g00852 580 ProSiteProfiles CRC domain profile. 109 233 IPR005172 -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 67 92 - -
Eupl10g00852 580 PANTHER TESMIN/TSO1-RELATED 56 507 IPR028307 -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 94 111 - -
Eupl10g00852 580 SMART CXC_2 193 234 IPR033467 -
Eupl10g00852 580 SMART CXC_2 108 148 IPR033467 -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 557 580 - -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 54 112 - -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 374 441 - -
Eupl10g00852 580 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 110 145 IPR005172 -
Eupl10g00852 580 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 196 230 IPR005172 -
Eupl10g00852 580 MobiDBLite consensus disorder prediction 384 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00852 Eupl-Chr10 27953941 27966886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00852 2 541 CPP Transcription Factor Family AT4G29000 51.712 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Eupl10g00852 TCR 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00852 - - nnu:104595159 726.087