Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00828 ATGGCTAGCCCCATTTTTTTGGTTTTCATTTTTTGTAACGCCTTTATCTGTACTTGGAGTAGAGGGAGAGGAAGGGAGAAGAGAAGAGAAGAGATGAGTTCTCTGCAGTTCTTCACTCCCTCCTCTTCTTCCTTGAAGAACCGTAATTTGAGTTCCAAGCAATTCACCTCTCCCTCTAAAAACCCTAATTTCAACCTTAATAGCTCAAAAACCCCTCATTTCAGTCGAACCCAACTCACTTCTTTCTTTAAAAACCCTAGTTTTCTAGGGTTTAAGCCCTTCTGCCCCAGAAATCCCTCTCAGAGACTTAAATGCAATGGTGTCAAAGACTCCAGTGAGGAAACTAAATCATTTTTGGACTTGGACAATGGTGGTGGTGGCGGTGGAGACGGGGACGGAGAAGAAAGCGATGGCGATGGCAATGGCGGCCGGGTTGAGGAGAAGACTGGTCCCTTTCCTGAATGGTTGAATTTGACCTCAGATGACGCTAAAACGGTTTTTGCGGCACTTGCTGTCTCCCTTGCCTTCCGGACATTCGTGGCTGAGCCTCGATTCATCCCTTCCTTGTCAATGTACCCTACATACGATATTGGAGACCGAATTGTTGCTGAAAAGGTTTCTTACTACTTCAGAAAACCATGCGCCAACGATATAGTTATTTTCAAAAGCCCGCCGGTCTTGCAGGAAGTAGGATATACTGACGAAGATGTCTTTATTAAACGAGTTGTTGCCAAGGAAGGTGATGTTGTGGAGGTTCATGATGGAAAGCTTTTAGTAAATGGTGTTGTAAGAAATGAAGATTTCATCATGGAGCCACCATCTTATGACATGACACCAATTCGTGTACCGGAGAACTCAGTCTTTGTTATGGGTGACAACCGCAACAACAGCTACGATTCACATATATGGGGTCCTCTTCCTGCCAAGAATATTATAGGAAGATCAGTATTTCGTTATTGGCCCCCAAAGAGGATCGGCAGCACAGTTTTTGAGGGTGGTTGTGCCGATAGGAAACAGGAGAGCAGTCCATCATCTTAA 1038 0.447 MASPIFLVFIFCNAFICTWSRGRGREKRREEMSSLQFFTPSSSSLKNRNLSSKQFTSPSKNPNFNLNSSKTPHFSRTQLTSFFKNPSFLGFKPFCPRNPSQRLKCNGVKDSSEETKSFLDLDNGGGGGGDGDGEESDGDGNGGRVEEKTGPFPEWLNLTSDDAKTVFAALAVSLAFRTFVAEPRFIPSLSMYPTYDIGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDEDVFIKRVVAKEGDVVEVHDGKLLVNGVVRNEDFIMEPPSYDMTPIRVPENSVFVMGDNRNNSYDSHIWGPLPAKNIIGRSVFRYWPPKRIGSTVFEGGCADRKQESSPSS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00828 345 Pfam Signal peptidase, peptidase S26 163 320 IPR019533 GO:0004252|GO:0006465
Eupl10g00828 345 CDD S26_SPase_I 182 314 IPR019533 GO:0004252|GO:0006465
Eupl10g00828 345 PRINTS Bacterial leader peptidase 1 (S26A) family signature 179 195 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl10g00828 345 PRINTS Bacterial leader peptidase 1 (S26A) family signature 238 250 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl10g00828 345 PRINTS Bacterial leader peptidase 1 (S26A) family signature 282 301 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl10g00828 345 ProSitePatterns Signal peptidases I signature 3. 287 300 IPR019758 GO:0004252|GO:0016020
Eupl10g00828 345 PANTHER SIGNAL PEPTIDASE I 151 326 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl10g00828 345 FunFam Peptidase/ serine-type peptidase 188 319 - -
Eupl10g00828 345 MobiDBLite consensus disorder prediction 40 72 - -
Eupl10g00828 345 MobiDBLite consensus disorder prediction 116 150 - -
Eupl10g00828 345 NCBIfam signal peptidase I 164 321 IPR000223 GO:0006508|GO:0008236|GO:0016020
Eupl10g00828 345 Gene3D Umud Fragment, subunit A 176 332 - -
Eupl10g00828 345 SUPERFAMILY LexA/Signal peptidase 177 331 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00828 Eupl-Chr10 27678281 27683243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00828 191 321 MADS-box Gene Family AT1G29960 32.331 4.02e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00828 K03100 - msin:131256838 422.55