Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00823 ATGTCGTCACCAACTCCGGGAGCTTCTCCAGCTCCCACATCGCCACCATCACCACCAGCATCAGCGCCACCGCCGGCGAACTCCACTACATCTCCGCCACCTCCGAGTAACTCCACTACGTCTCCGCCACCTCCTGCAGCAGTACCACCCGCAGCAAGTCCACCGCCTCCGACAACTCCGGTTACTCCAGCCGCCTCTCCACCGCCTCCGACAACTCCGGTTACCCCAGCCGCCTCTCCACCGCCTCCTACAACTGCGGTAACCCCAGCCGCTTCTCCTCCACCTCCGGAAACCACAGCAACCTCTCCGCCCCCTTCCACAACCCCCAATGCCTCATCGCCACCACCACCGGCATCGACGACGTCTCCATCGCCTCCCTCTGGTTCTTCGACTCCGGGGACTCAAAGGAGTCCGCCACCACCACCTGTGACCGGAAGATCGCCGCCGAGTTCGTCTCAGACGCCTCCATCGCCGGAATCGTCGTCAAGTATATCGACGGGGCTCGTTGTGGGGATTGCGATTGGGGGAGTGGTTTTGCTTCTTGTGTTGAGTTTGCTGTTTATTTGTTGTAAGAAGAAGAGGAGGAGAGATCATCAGGGGCCGTTGGATTACTACGGACATCCGCTGCCTGGGCCGAAAGATGGCCATTATGGTGGGCCGCCCCAACAATGGCAACACAATGCTCCTCCTCCCCCACCAGCGGACCATGTTGTCTCAGTGCTACCAAAACCGTCTCCCCCACCAGCTGTTGCATCACGACCACCACAGTCACCAGTCTATGTTCCAACGCCCCCGCCACCGCCACCACCATTCATGAGCAGTAGTGGAGGTTCTGGGTCCAATTATTCAGGGTCTGAAAACCCACTCCCACCGCCATCCCCTGGAATTGCTTTAGGTTTCTCAAAGAGCTCATTCACATATGAAGAATTAGCGATGGCAACAGACGGCTTCTCAAATGCAAACCTTCTTGGACAAGGTGGTTTTGGGTATGTCCACAAAGGAGTCCTTCCAAATGGAAAAGAAGTTGCAGTTAAGCAGCTGAAAGCTGGAAGCGGGCAAGGGGAGCGTGAATTTCAGGCGGAAGTCGAGATTATTAGCCGAGTACATCATAAGCATCTTGTTTCATTGGTTGGATATTGCACTACTGGAGCACAAAGAATGCTTGTCTACGAGTTTGTTCCGAACAACACCATGGAGTTTCACTTGCATGGAAAGGGGCGACCAACTATGGACTGGGCGACCAGACTGAAAATTGCTTTGGGCTCTGCAAAAGGACTTGCATATCTGCATGAGGATTGCCATCCAAAAATAATTCATCGTGATATCAAGGCTTCTAATATTCTTCTTGATTTTAAATTTGAGGCGAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCTTCTGATACCTACACTCACGTTTCCACCCGTGTAATGGGAACTTTTGGGTATCTAGCTCCAGAATATGCATCAAGTGGGAAACTCACAGATAAATCAGACGTTTTCTCTTTTGGGGTCATGCTTCTAGAATTGATTACTGGACGTCGACCTGTCGATACAGCTCAATCCTACATGGATGATAGCTTGGTAGATTGGGCAAGGCCCTTGCTCACACGAGCTTTGGAAGATGGCAACTACGATACTCTTGTTGATTCAAAATTGCAAAAGGATTACAACCCTAACGAGATGGCATGCATGGTTGCTTGTGCTGCTGCTTGTGTGCGCCATTCTGCACGGCGTCGACCACGAATGAGCCAGATAGTACGGGCCTTGGAAGGAGATGCATCTCTCTCCGACCTGAATGAAGGCATCAGACCTGGACATAGCACGGTCTACAGTTCATATGGAAGCTCTGATTATGACACCAGCCAGTACAATGAGGACATGAAGAAATTTAGAAAGATGGCATTGGCCAGCCGGGATTATGGCAGCAGTGAGTACAGTGGACCCACTAGCGAGTATGGTCTGTATCCATCTGGCTCAAGCAGCGAAGGCCAGCAAACCACCCGAGAGATGGAGATGAGGAAGATGAACAAAGATAGTCAAGGTTTCAGTGGAATTTCTTGA 2064 0.517 MSSPTPGASPAPTSPPSPPASAPPPANSTTSPPPPSNSTTSPPPPAAVPPAASPPPPTTPVTPAASPPPPTTPVTPAASPPPPTTAVTPAASPPPPETTATSPPPSTTPNASSPPPPASTTSPSPPSGSSTPGTQRSPPPPPVTGRSPPSSSQTPPSPESSSSISTGLVVGIAIGGVVLLLVLSLLFICCKKKRRRDHQGPLDYYGHPLPGPKDGHYGGPPQQWQHNAPPPPPADHVVSVLPKPSPPPAVASRPPQSPVYVPTPPPPPPPFMSSSGGSGSNYSGSENPLPPPSPGIALGFSKSSFTYEELAMATDGFSNANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNNTMEFHLHGKGRPTMDWATRLKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLDFKFEAKVADFGLAKFSSDTYTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTAQSYMDDSLVDWARPLLTRALEDGNYDTLVDSKLQKDYNPNEMACMVACAAACVRHSARRRPRMSQIVRALEGDASLSDLNEGIRPGHSTVYSSYGSSDYDTSQYNEDMKKFRKMALASRDYGSSEYSGPTSEYGLYPSGSSSEGQQTTREMEMRKMNKDSQGFSGIS* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00823 687 MobiDBLite consensus disorder prediction 1 123 - -
Eupl10g00823 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Eupl10g00823 687 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Eupl10g00823 687 Gene3D Phosphorylase Kinase; domain 1 299 392 - -
Eupl10g00823 687 Pfam Protein tyrosine and serine/threonine kinase 321 590 IPR001245 GO:0004672|GO:0006468
Eupl10g00823 687 MobiDBLite consensus disorder prediction 1 164 - -
Eupl10g00823 687 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 176 647 IPR047117 -
Eupl10g00823 687 SUPERFAMILY Protein kinase-like (PK-like) 293 590 IPR011009 -
Eupl10g00823 687 SMART serkin_6 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00823 687 FunFam proline-rich receptor-like protein kinase PERK1 295 392 - -
Eupl10g00823 687 MobiDBLite consensus disorder prediction 132 155 - -
Eupl10g00823 687 MobiDBLite consensus disorder prediction 643 667 - -
Eupl10g00823 687 MobiDBLite consensus disorder prediction 224 273 - -
Eupl10g00823 687 MobiDBLite consensus disorder prediction 196 295 - -
Eupl10g00823 687 Gene3D Transferase(Phosphotransferase) domain 1 393 601 - -
Eupl10g00823 687 ProSiteProfiles Protein kinase domain profile. 317 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00823 687 MobiDBLite consensus disorder prediction 641 687 - -
Eupl10g00823 687 FunFam Proline-rich receptor-like protein kinase PERK1 393 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00823 Eupl-Chr10 27629769 27635289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00823 146 663 Trihelix Transcription Factor Family AT1G70460 50.851 1.73e-167 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Eupl10g00823 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00823 - - vvi:100247489 810.446