Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00770 ATGATCAAGATTTCTTGCCAGTTTGTGGTGATGGATCCCAGCTCTTTCGAGAAATGGAAGGCAGAGCTGCCCATGGAAGGGTTTTACTTGGATTTGCCTTCACCATCTTCAACAGAGATATTTTATCTCAGAACAGGGTATTATCGTATTTTCGAGCGCACTTACTCGGCTATCCGCACCTACTGGAACTCTGTAATTTTGGTTTCGAAGATCCGATCTTCTCTTTCCAGAAGCGAAGGCGAAGCGAAGATTCGATTCGATTCGATTTTAACTCCAGAAGAACTTGTTGAATCTTCTATAATTCACTCCCGGATCAGCGACACAGTTTCCCTCCAGATCGAAAAGACACCTCAAAAGATGATCAACAAAGACTATGAAATAGAGACCACTACCTCATGCTCTCAGAAGTCCAATGGAGGTTGCATGCTCACAGAAGTAAGAGATGATGCGAACTCCACTGCCGCAGAAAGGCTAGAGAAAGGAGTTATGCGGAATGGATGTTCACATTATCGACGAAGGTGCCGCATTAGAGCTCCGTGCTGCAATGAAATTTTTGATTGTCGCCATTGTCATAATGAAGAAAAGAACAGTATTAACGTCGAAAGAAAGCACAGACATGAGCTTCCACGCCATCAAGTGCGACAGGTCATATGTTCACTCTGTAACACCGAACAAGAGGTTCGCCAAGTTTGTATCAACTGTGGTGTGTGTATGGGGGTATACTTCTGCGAAATGTGCAAGTTTTTCGATGATGATACATCAAAGAAACAGTATCATTGTAATGGCTGTGGAATTTGCAGAATTGGTGGGCGTGAAAATTTCTTCCATTGCTATAAATGCGGTTGCTGTTACTCGATTCTGCTAAAGAACAGTCATCCTTGTGTGGAAGGAGCAATGCATCATGACTGCCCTGTTTGCTTCGAGTATTTATTTGAGTCAACCAATGATGTGAGCGTCTTGCCATGCGGACACACTATTCATGTGAATTGCTTGAAGGAGATGCATCAACACTTGCAATATGCTTGCCCTCTTTGCTCGAAGTCCGTCTGCGATATGTCCAAAGTATGGGAAAAACTTGACATGGAGATTGCAGCCATACCCATGCCTGTATCTTATCAAAACAAAATGGTGTGGATATTGTGCAACGACTGCGGAGCAAACTCACAAGTCCAGTTCCATGTAGTGGCTCAGAAATGCCTCAAGTGCAACTCGTACAATACTCGCCAGACGAGAGGGGGGACAGTGACGACAACTGCCTCATGCTAA 1266 0.4415 MIKISCQFVVMDPSSFEKWKAELPMEGFYLDLPSPSSTEIFYLRTGYYRIFERTYSAIRTYWNSVILVSKIRSSLSRSEGEAKIRFDSILTPEELVESSIIHSRISDTVSLQIEKTPQKMINKDYEIETTTSCSQKSNGGCMLTEVRDDANSTAAERLEKGVMRNGCSHYRRRCRIRAPCCNEIFDCRHCHNEEKNSINVERKHRHELPRHQVRQVICSLCNTEQEVRQVCINCGVCMGVYFCEMCKFFDDDTSKKQYHCNGCGICRIGGRENFFHCYKCGCCYSILLKNSHPCVEGAMHHDCPVCFEYLFESTNDVSVLPCGHTIHVNCLKEMHQHLQYACPLCSKSVCDMSKVWEKLDMEIAAIPMPVSYQNKMVWILCNDCGANSQVQFHVVAQKCLKCNSYNTRQTRGGTVTTTASC* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00770 421 ProSiteProfiles Zinc finger CTCHY-type profile. 238 302 IPR017921 -
Eupl10g00770 421 Pfam Ring finger domain 302 345 IPR001841 -
Eupl10g00770 421 ProSiteProfiles Zinc finger CHY-type profile. 160 236 IPR008913 GO:0008270
Eupl10g00770 421 CDD RING-H2_Pirh2-like 302 346 - -
Eupl10g00770 421 Gene3D - 374 418 - -
Eupl10g00770 421 SUPERFAMILY CHY zinc finger-like 165 238 IPR037274 GO:0008270
Eupl10g00770 421 Pfam CHY zinc finger 167 248 IPR008913 GO:0008270
Eupl10g00770 421 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 121 411 - -
Eupl10g00770 421 SMART ring_2 303 345 IPR001841 -
Eupl10g00770 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 348 IPR013083 -
Eupl10g00770 421 Pfam Zinc-ribbon 350 408 IPR039512 -
Eupl10g00770 421 SUPERFAMILY Zinc hairpin stack 239 296 IPR037275 -
Eupl10g00770 421 ProSiteProfiles Zinc finger RING-type profile. 303 346 IPR001841 -
Eupl10g00770 421 SUPERFAMILY RING/U-box 302 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00770 Eupl-Chr10 26928280 26937635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00770 19 415 C2H2 Transcription Factor Family AT3G18290 30.713 1.63e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00770 K10144 - msin:131254484 530.791