Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00741 ATGCCTGTGAAATCCGCACAATCGTCTTATCGGGATCGCACGCAAGAGTTTCTCACTGTAGCAGAGAGGCTAAAGAAGTCGTTCTCGTCAGCGCCAAATGCGCCAAGTAGTAGTAGCGCGAAACCAGAGGGACCACGATCTGCTGTCTCTATTCAGTCGGAATTTAACAAGAGGGCTTCAAAAATCGGATATGGGATCCATCAGACGTCACAGAAGCTTGCAAAGCTCGCCAAATTGGCAAAAAGGACATCAGTTTTTGATGATCCAACTATGGAGATCCAAGAGCTGACAGCAGTTATCAAGCAGGACATTACTGCGCTGAACTCAGCAGTAGTAGACCTGCAGTTCGTCTGCAACTCCCAAAATGAGAGTGGGAACATCTCAAGTGACACCACCAGTCATTCTACCACAGTTGTAGATAACCTGAAGAACCGCTTGATGAGCACCACAAAAGAGTTCAAAGAAGTCCTTACCATGCGGACGGAGAACTTGAAGGTTCATGAGAACAGAAGGCAGTTGTTTTCTTCCAATGCTACGAAGGATACTACCAATCCTTTTGTTCGGCAGCGTCCATTAGCGGCCAGGGGGGCTGCCAGTGCCTCAACCACCTCTCCTCCTCCATGGGCCAATGGGTCAGCATCGTCATCCCAGTTATTTCCTAGGAAGCAGATGGATGGGGAGCCATCCACCCCCTCTCAGCCATTGCTACAGCAGCATCAACAGCAACAGCAGATGGTGCCATTACAAGACAGTTACATGCAGAGTAGAGCTGAAGCTCTTCAAAATGTGGAATCAACCATTCACGAGCTGAGCAACATCTTCCAACAATTGGCAACCATGGTTTCTCAGCAAGGAGAGCTTGCCATCAGGATTGATGAGAACATGGATGACTCTCTGGCAAACGTGGAGGGGGCACAAGGGGCGCTACTGAAGTACCTCAATGGAATCTCGTCGAACAGGTGGTTGATGATCAAGATATTCTTTGTATTGATTGTATTCCTCATGATCTTCTTATTTTTTGTGGCATGA 1029 0.4791 MPVKSAQSSYRDRTQEFLTVAERLKKSFSSAPNAPSSSSAKPEGPRSAVSIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSAVVDLQFVCNSQNESGNISSDTTSHSTTVVDNLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSNATKDTTNPFVRQRPLAARGAASASTTSPPPWANGSASSSQLFPRKQMDGEPSTPSQPLLQQHQQQQQMVPLQDSYMQSRAEALQNVESTIHELSNIFQQLATMVSQQGELAIRIDENMDDSLANVEGAQGALLKYLNGISSNRWLMIKIFFVLIVFLMIFLFFVA* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00741 342 Pfam SNARE domain 287 338 IPR000727 -
Eupl10g00741 342 MobiDBLite consensus disorder prediction 29 50 - -
Eupl10g00741 342 PANTHER SYNTAXIN 52 337 IPR045242 -
Eupl10g00741 342 Gene3D - 50 305 - -
Eupl10g00741 342 MobiDBLite consensus disorder prediction 170 186 - -
Eupl10g00741 342 SUPERFAMILY t-snare proteins 53 305 IPR010989 GO:0016020|GO:0016192
Eupl10g00741 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl10g00741 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Eupl10g00741 342 CDD SNARE_syntaxin5 253 337 - -
Eupl10g00741 342 MobiDBLite consensus disorder prediction 168 187 - -
Eupl10g00741 342 MobiDBLite consensus disorder prediction 193 247 - -
Eupl10g00741 342 MobiDBLite consensus disorder prediction 196 247 - -
Eupl10g00741 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Eupl10g00741 342 MobiDBLite consensus disorder prediction 27 50 - -
Eupl10g00741 342 SMART tSNARE_6 245 312 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00741 Eupl-Chr10 26445932 26451915 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00741 1 342 SNARE and Associated Proteins AT3G24350 65.395 6.14e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00741 K08490 - nnu:104592278 503.827