Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00725 ATGGCCGTTCCCTTGCTGGAACCACATCGTGAAGGTCAAACTGACAGACACCCTTTGCTAATGGAGCGGCCAGAGAATCATAACGACCGCGGGCACATTATTGACATTGCGAGGGGTGATGATGCTTCCTCGTCAAGCTCATCTCATGGCAATTCTCCTCGTATGGACCCCCCACAGCATGAAGACAGACCTTCAAGTAGCACACGGCCCCCTCCCGTTTCTCAATCTTCATTGTCTTCCTCTAACGGATCAAACTCCAGGAACTCCTCATTTATGAGGAGAGGTGATGGGTATGGCCGTCGCCACAGGAGCCCGTTGAATTCTGGGTTATGGATTTCCATTGAGCTAGTCATCACTGTGAGCCAGATTATTGCATCCATTGTTGTTTTGTCTTTGTCGAGGCATGAGAAACCGCAAGCCCCGTTGTTTGCATGGGTTGTGGGTTATGCTGCTGGATGTGTTGCAACCCTCCCACTTCTATATTGGCGTTATCTTCACCGCAACAACCATGCTATTGAGCAAGATTCGGCACAACAACGTCAGGCTTCTTCTCTAAGCAACCCTCCTTCCGAACCTAGTCCTTACACATCGATCTCAGTTTCACGGGCCTTAGAAGAGGAAGACCGCCGGACCACAGTTACAGCCACATGGAATGGCCACAATGTGGGGATCACAAGTGCAAGGTTTAACGTGCTAGTAGATCACTTTAAGATGGCCTTGGATTGCTTTTTCGCAGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGAGGGCACTCCTCTTCTTCAGAGGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGTATCGGGTATGCTATGCCTTTCATTCTATGTGCAACGATCTGCTGCTGCTTGCCTTGTATAATTTCCATCCTGGGCTTCCGAGAAGATCTGACTCAGACTAGAGGAGCTACCCCAGAATCTATTAGTGCTCTCCCAATCTACAAGTTTAAGTTGAAGAAAAACAGTAATGGAGATGCTAGAGAAATCAACTCGGAGGGAGCGGGTGATGGTGGGGTCTTGGCAGCTGGAACCGAAAAAGAGCGTGCGATCTCAGGAGAAGATGCAGTTTGTTGCATTTGCTTGGCAAAATATGCGGACAATGACGAGTTGAGAGAGCTACCCTGCACTCATTTCTTCCACATGGAATGCGTAGACAAATGGCTGAAGATCAATGCATTGTGCCCCCTCTGCAAGTGTGAGGTTGGGGAGAGCAGCAGGGGCTTACCATCAGCAACGTACTCCAGCTAG 1287 0.4872 MAVPLLEPHREGQTDRHPLLMERPENHNDRGHIIDIARGDDASSSSSSHGNSPRMDPPQHEDRPSSSTRPPPVSQSSLSSSNGSNSRNSSFMRRGDGYGRRHRSPLNSGLWISIELVITVSQIIASIVVLSLSRHEKPQAPLFAWVVGYAAGCVATLPLLYWRYLHRNNHAIEQDSAQQRQASSLSNPPSEPSPYTSISVSRALEEEDRRTTVTATWNGHNVGITSARFNVLVDHFKMALDCFFAVWFVVGNVWIFGGHSSSSEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLTQTRGATPESISALPIYKFKLKKNSNGDAREINSEGAGDGGVLAAGTEKERAISGEDAVCCICLAKYADNDELRELPCTHFFHMECVDKWLKINALCPLCKCEVGESSRGLPSATYSS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00725 428 MobiDBLite consensus disorder prediction 176 196 - -
Eupl10g00725 428 Pfam Ring finger domain 370 411 IPR001841 -
Eupl10g00725 428 SMART ring_2 370 410 IPR001841 -
Eupl10g00725 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 419 IPR013083 -
Eupl10g00725 428 MobiDBLite consensus disorder prediction 1 102 - -
Eupl10g00725 428 ProSiteProfiles Zinc finger RING-type profile. 370 411 IPR001841 -
Eupl10g00725 428 MobiDBLite consensus disorder prediction 66 92 - -
Eupl10g00725 428 MobiDBLite consensus disorder prediction 9 37 - -
Eupl10g00725 428 SUPERFAMILY RING/U-box 363 417 - -
Eupl10g00725 428 MobiDBLite consensus disorder prediction 40 54 - -
Eupl10g00725 428 FunFam E3 ubiquitin-protein ligase 353 420 - -
Eupl10g00725 428 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00725 Eupl-Chr10 26156099 26163284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00725 14 418 C3H Transcription Factor Family AT1G80400 57.554 5.25e-158 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00725 - - nnu:104592289 669.463