Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00715 ATGGATGATCCCGATGTCTGGGCACCGCCAAGCCGAGACAATGGAAGCAGAAGACCCACGAGGCCTGGACAAATGGGTATGAGGAAATCACCACAAGATGCAACTTGGGCTCGCAGTTCAACTAGGGCAGGAACAACTGGTCGCGGAGCGAAGACTAATGCTTCAAGTAGATCTGGAGTCCGAGCATCAACAGCTTCTGGACCTGGGAAGAGAGGCACTGGTTCTAACAGATCCAATTCTAGTAAGACTGATTCAGTGAATGGCGATGCTGAAGAAGGAAAGACAAGGAAGGGACAGTATGAGGGACCTGATCCAGATTTGGCAGCCATGCTCGAAAGGGATGTCTTGGAGACCAGCCCTGGAGTGAGATGGGAAGATGTTGCTGGACTGAGTGAAGCAAAAAGACTTTTGGAGGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAGTATTTCCAGGGCATTAGGAGGCCATGGAAAGGTGTTCTAATGTTTGGTCCACCTGGTACTGGGAAGACACTCTTGGCTAAGGCGGTAGCTACTGAGTGTGGTACGACATTTTTCAATGTTTCTTCTGCTACCTTGGCTTCAAAATGGCGTGGGGAGAGTGAACGCATGGTTCGATGCTTGTTTGATCTTGCAAGAGCTTATGCTCCAAGCACAATTTTCATTGATGAGATTGATTCTCTTTGCAATGCTAGGGGGGCTTCAGGGGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTTGTACAGGTAGATGGTGTCAATAACAGCTCTTCTGGTGAAGATGGCGGACGCAAAATAGTGATGGTCTTGGCAGCCACTAACTTTCCGTGGGATATAGATGAGGCGCTTAGGAGGAGGCTGGAAAAGCGAATATATATTCCTTTGCCAAATTTTGAGAGTCGAAAAGAGCTTATTCGGATTAACCTAAAAACAGTTGAGGTGGCTCCCGATGTTAATATCGATCAAGTAGCCCGCCGAACGGATGGATACAGTGGAGATGATCTCACTAATGTCTGTCGGGATGCTTCCTTGAATGGCATGAGGCGTAAGATAGCAGGCAAGACGCGCGACGAGATCAAGAACATGTCTAAGGACGAAATCTCAAAGGACCCGGTTGCCATGTGTGACTTTGAAGAAGCTCTGATTAAAGTTCAACGAAGTGTTTCTGCAGCCGATATTGAACGTCATGAGAAGTGGTTTTCAGAGTTTGGTTCGGCGTAA 1230 0.4789 MDDPDVWAPPSRDNGSRRPTRPGQMGMRKSPQDATWARSSTRAGTTGRGAKTNASSRSGVRASTASGPGKRGTGSNRSNSSKTDSVNGDAEEGKTRKGQYEGPDPDLAAMLERDVLETSPGVRWEDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSSGEDGGRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDQVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALIKVQRSVSAADIERHEKWFSEFGSA* 410
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00715 409 MobiDBLite consensus disorder prediction 33 86 - -
Eupl10g00715 409 Pfam Vps4 C terminal oligomerisation domain 362 407 IPR015415 -
Eupl10g00715 409 Pfam ATPase family associated with various cellular activities (AAA) 161 298 IPR003959 GO:0005524|GO:0016887
Eupl10g00715 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 405 IPR027417 -
Eupl10g00715 409 MobiDBLite consensus disorder prediction 1 105 - -
Eupl10g00715 409 FunFam Katanin p60 ATPase-containing subunit A1 119 287 - -
Eupl10g00715 409 SMART AAA_5 157 300 IPR003593 GO:0016887
Eupl10g00715 409 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 1 409 IPR028596 GO:0008017|GO:0008568|GO:0051013
Eupl10g00715 409 Gene3D - 299 385 - -
Eupl10g00715 409 FunFam Katanin p60 ATPase-containing subunit A1 299 385 - -
Eupl10g00715 409 PANTHER AAA DOMAIN-CONTAINING 56 408 - -
Eupl10g00715 409 Gene3D - 119 399 IPR027417 -
Eupl10g00715 409 MobiDBLite consensus disorder prediction 87 105 - -
Eupl10g00715 409 Pfam AAA+ lid domain 320 361 IPR041569 -
Eupl10g00715 409 ProSitePatterns AAA-protein family signature. 270 289 IPR003960 GO:0005524|GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Eupl10g00715 Eupl-Chr10 25993190 25999910 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00715 113 401 Calmodulin-binding Proteins AT3G56690 39.933 1.02e-51 184
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00715 K07767 - msin:131223314 748.429