Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl10g00715 | ATGGATGATCCCGATGTCTGGGCACCGCCAAGCCGAGACAATGGAAGCAGAAGACCCACGAGGCCTGGACAAATGGGTATGAGGAAATCACCACAAGATGCAACTTGGGCTCGCAGTTCAACTAGGGCAGGAACAACTGGTCGCGGAGCGAAGACTAATGCTTCAAGTAGATCTGGAGTCCGAGCATCAACAGCTTCTGGACCTGGGAAGAGAGGCACTGGTTCTAACAGATCCAATTCTAGTAAGACTGATTCAGTGAATGGCGATGCTGAAGAAGGAAAGACAAGGAAGGGACAGTATGAGGGACCTGATCCAGATTTGGCAGCCATGCTCGAAAGGGATGTCTTGGAGACCAGCCCTGGAGTGAGATGGGAAGATGTTGCTGGACTGAGTGAAGCAAAAAGACTTTTGGAGGAAGCTGTCGTTCTTCCTTTGTGGATGCCTGAGTATTTCCAGGGCATTAGGAGGCCATGGAAAGGTGTTCTAATGTTTGGTCCACCTGGTACTGGGAAGACACTCTTGGCTAAGGCGGTAGCTACTGAGTGTGGTACGACATTTTTCAATGTTTCTTCTGCTACCTTGGCTTCAAAATGGCGTGGGGAGAGTGAACGCATGGTTCGATGCTTGTTTGATCTTGCAAGAGCTTATGCTCCAAGCACAATTTTCATTGATGAGATTGATTCTCTTTGCAATGCTAGGGGGGCTTCAGGGGAGCATGAATCGTCCAGAAGGGTGAAGTCTGAACTTCTTGTACAGGTAGATGGTGTCAATAACAGCTCTTCTGGTGAAGATGGCGGACGCAAAATAGTGATGGTCTTGGCAGCCACTAACTTTCCGTGGGATATAGATGAGGCGCTTAGGAGGAGGCTGGAAAAGCGAATATATATTCCTTTGCCAAATTTTGAGAGTCGAAAAGAGCTTATTCGGATTAACCTAAAAACAGTTGAGGTGGCTCCCGATGTTAATATCGATCAAGTAGCCCGCCGAACGGATGGATACAGTGGAGATGATCTCACTAATGTCTGTCGGGATGCTTCCTTGAATGGCATGAGGCGTAAGATAGCAGGCAAGACGCGCGACGAGATCAAGAACATGTCTAAGGACGAAATCTCAAAGGACCCGGTTGCCATGTGTGACTTTGAAGAAGCTCTGATTAAAGTTCAACGAAGTGTTTCTGCAGCCGATATTGAACGTCATGAGAAGTGGTTTTCAGAGTTTGGTTCGGCGTAA | 1230 | 0.4789 | MDDPDVWAPPSRDNGSRRPTRPGQMGMRKSPQDATWARSSTRAGTTGRGAKTNASSRSGVRASTASGPGKRGTGSNRSNSSKTDSVNGDAEEGKTRKGQYEGPDPDLAAMLERDVLETSPGVRWEDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSSGEDGGRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDQVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALIKVQRSVSAADIERHEKWFSEFGSA* | 410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl10g00715 | 409 | MobiDBLite | consensus disorder prediction | 33 | 86 | - | - | |
| Eupl10g00715 | 409 | Pfam | Vps4 C terminal oligomerisation domain | 362 | 407 | IPR015415 | - | |
| Eupl10g00715 | 409 | Pfam | ATPase family associated with various cellular activities (AAA) | 161 | 298 | IPR003959 | GO:0005524|GO:0016887 | |
| Eupl10g00715 | 409 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 121 | 405 | IPR027417 | - | |
| Eupl10g00715 | 409 | MobiDBLite | consensus disorder prediction | 1 | 105 | - | - | |
| Eupl10g00715 | 409 | FunFam | Katanin p60 ATPase-containing subunit A1 | 119 | 287 | - | - | |
| Eupl10g00715 | 409 | SMART | AAA_5 | 157 | 300 | IPR003593 | GO:0016887 | |
| Eupl10g00715 | 409 | Hamap | Meiotic spindle formation protein mei-1 [mei-1]. | 1 | 409 | IPR028596 | GO:0008017|GO:0008568|GO:0051013 | |
| Eupl10g00715 | 409 | Gene3D | - | 299 | 385 | - | - | |
| Eupl10g00715 | 409 | FunFam | Katanin p60 ATPase-containing subunit A1 | 299 | 385 | - | - | |
| Eupl10g00715 | 409 | PANTHER | AAA DOMAIN-CONTAINING | 56 | 408 | - | - | |
| Eupl10g00715 | 409 | Gene3D | - | 119 | 399 | IPR027417 | - | |
| Eupl10g00715 | 409 | MobiDBLite | consensus disorder prediction | 87 | 105 | - | - | |
| Eupl10g00715 | 409 | Pfam | AAA+ lid domain | 320 | 361 | IPR041569 | - | |
| Eupl10g00715 | 409 | ProSitePatterns | AAA-protein family signature. | 270 | 289 | IPR003960 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl10g00715 | Eupl-Chr10 | 25993190 | 25999910 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl10g00715 | 113 | 401 | Calmodulin-binding Proteins | AT3G56690 | 39.933 | 1.02e-51 | 184 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl10g00715 | K07767 | - | msin:131223314 | 748.429 |