Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00695 ATGACGATAGACGACGATAAGTCGATATACGTAGGTGGACTCCCTTACGATTCGACCGAAGACACCCTTCGCAGAGTCTTCAATTTATATGGCTCCGTTGTCGCCGTTAAGATTATTAATGATCGTGAAATTGGGGGAAAATGCTATGGCTTTGTCACTTTTACGAATCCGAGATCTGCAATTGATGCCATCGCCGATATGAATGGCAGGACTATTGGCGGGCGAGTGGTAAGAGTCAATGAAGTAAGGACCAGAGGCACAAGACCAAATTTTAATCGTGAAAATATCCGTCGGGATACTGAGAGGGACATAGACTGGGACAGGGGCAGGGATCGAGAGAGGGATCATGAGCATGATAGGGACCGTTATAGGGATCGAAACAATGATCGGTCTCGAGATCGTGATCGGGAGTGGGAAAGAGAATATGAGCGTCCACGTGATCATGATCGAACTAAAGACCGTTTCCTGGATCGAGATCCTGATTGGGATCAGGAGCACAGTGAGCAAGAATGGAATAGGAATCACGATCGAGATTGGGGAAGGGACCATGATCTCGACTGGGACCGAGATAAAGAAATGGATAGGACTAATGATCATGATAGAAGCAGAGATAAGGATAAAGATCAACAATCCAAGAATCGTTCTCGTCTCATTGATCGGCGGAGTAGAGAGCTGTCATCAAACTCCAGCGATGATTATCATTACCAGGTGAAGGAACAATTGGAGATATCAATTCAAAGGCGTGAGCATCTTCAGAAGGAGATTTCTCAGATTGAAGAGAAGTTAGAAGAGAAACAACAGCTTGCTTCAGATTTACAGAAGAAATCTCAGAAACTGGAGGATGTGTTGGCCACTGCTAAGAAGCTCTCTTCTCAGCGACAAATGCAGTTGTCCAAGTTGCAGAGATGTTTTCTGCAGGTAAGAGACTACACCGAAAGACTCAAAAGCTGCGAACAGGAACTGCAGTCTCTTGTTGATACGACAATAGTCGAAACTGACGAGGATGCCGCCGCAAGGGATGGTGCCTTGTTCACAAACGGCAAGGCTCTAAAAACAATGATAGGAAGGGGAAAGGATGTGGATTGA 1086 0.4558 MTIDDDKSIYVGGLPYDSTEDTLRRVFNLYGSVVAVKIINDREIGGKCYGFVTFTNPRSAIDAIADMNGRTIGGRVVRVNEVRTRGTRPNFNRENIRRDTERDIDWDRGRDRERDHEHDRDRYRDRNNDRSRDRDREWEREYERPRDHDRTKDRFLDRDPDWDQEHSEQEWNRNHDRDWGRDHDLDWDRDKEMDRTNDHDRSRDKDKDQQSKNRSRLIDRRSRELSSNSSDDYHYQVKEQLEISIQRREHLQKEISQIEEKLEEKQQLASDLQKKSQKLEDVLATAKKLSSQRQMQLSKLQRCFLQVRDYTERLKSCEQELQSLVDTTIVETDEDAAARDGALFTNGKALKTMIGRGKDVD* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00695 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Eupl10g00695 361 CDD RRM_SF 9 80 - -
Eupl10g00695 361 Coils Coil 307 327 - -
Eupl10g00695 361 Coils Coil 241 292 - -
Eupl10g00695 361 PANTHER GEO13361P1-RELATED 7 151 - -
Eupl10g00695 361 MobiDBLite consensus disorder prediction 149 175 - -
Eupl10g00695 361 MobiDBLite consensus disorder prediction 188 228 - -
Eupl10g00695 361 MobiDBLite consensus disorder prediction 188 233 - -
Eupl10g00695 361 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 99 - -
Eupl10g00695 361 Gene3D - 2 98 IPR012677 -
Eupl10g00695 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Eupl10g00695 361 SMART rrm1_1 8 80 IPR000504 GO:0003723
Eupl10g00695 361 SUPERFAMILY RNA-binding domain, RBD 4 106 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00695 Eupl-Chr10 25352342 25364817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00695 17 73 Eukaryotic Initiation Factors Gene Family AT1G71770 36.207 1.69e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00695 - - nnu:104595286 421.009