Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00665 ATGTATATAAAGCAGGTGATCATCGAAGGGTTTAAGAGCTATAAGGAACAAATTGCTACTGAACCGTTTAGTCCAAAAGTTAATTGTGTTGTTGGTGCTAATGGTTCTGGCAAGACAAACTTTTTCCATGCAATACGTTTTGTACTCAGCGACCTGTTCCAGAACCTGCGCAGTGAAGATAGGCATGCCCTTCTACATGAAGGCGCAGGTCATCAAGTGTTATCTGCTTTTGTGGAGATAGTGTTTGATAATTCTGATAATCGCATCCCCGTTGACAAGGAAGAGGTTCGATTGCGAAGAACAATTGGTCTGAAAAAGGATGAGTATTTTTTGGATGGAAAACATATCACGAAAACGGAAGTTATGAATTTACTGGAAAGTGCTGGGTTCTCACGTTCCAATCCATATTATGTTGTTCAGCAAGGAAAGATAGCATCATTGACATTAATGAAAGACTCTGAGCGACTGGATCTGCTGAAGGAAATTGGTGGCACTCGAGTTTATGAGGAGAGACGCCGGGAGAGTTTGAAAATTATGCAAGAAACTGGTAATAAGAGGAAGCAGATAATCCAAGTTGTTCAGTACTTGGATGAGAGATTAAGGGAGCTGGATGAAGAGAAAGAGGAGTTGAAAAAATATCAGCAGCTTGACAAGCAGCGTAGATCTCTAGAATATACCATTTACGACAAGGAACTCCATGACGCTAGGCAGAAATTGGGGGAGGTAGAAGAGGCTCGAACCAAGGTTTCTGAGACATCAGCTAAAATGTATAATGATGTGCTGGATGCCCATGAAAAGTCCAAGGATTTAGAGAAGGAACATAAAGATCTTACGAAAAATATTCAAGTTTTGAACAAAGAAAAAGAAGTAATAGAGAAGCGAAGGACTGAAGCGATTAAGAAACATGCACAGGTTGAACTTGATGTCAGAGACCTAGAAGAGAAAACTTCTGGGAATATTCGAGCAAAGGAAGGGGCTGCAAGGGAGCTTGAAGTTCTACAGAAGATAATTCAGGAATCCAGGGATGAGCTGGAAACAATTAGGTCTTCATATAATGATCAAGTGACCAAGGAAGAGGAAATAACAAAAGGAATAATGGATCGCGAAAAGCAGCTTAGTATTCTTTACCAAAAACAAGGCCGTGCCACTCAGTTTGCCAATAAAGCTGCAAGAGACAAATGGCTTCAAAAGGAAATTGATGATCTTCAACGAGTTCTTTCATCAAATTTGGAGCAGGAGAAAAAGCTTCAGGATGAAATTCAGGAGCTTAAATCTGGGTTACAAAAGCAGGAAGTGTACATAGAGGAACGCACAGCTGAATTAGGAAAGCTAGAGTCTCACATATCAAAATATCACGAGGGCTTCAATAGTTTGAAGAAAGAGCGAGATGAACTACAGGATAAACGGAAGTCCTTATGGGAGAAGGAAAGCGATCTCTCTGCTGAAATTGATAAGCTTAAAGCAGATGTTGTAAAAGCGGAGAAGAGCCTGGATCATGCTACACCTGGTGATATCAGAAGAGGATTGAATTCGGTCCGAAGGCTATGTAGAGATCACAATATTCGTGGAGTATTTGGTCCAATTATTGAGTTGCTTGATTGTGATGAAAAGTTTTTCACTGCTGTTGAAGTTACTGCTGGAAACAGCTTATTTCATGTGGTGGTAGAAACAGATGAAGTATCAACTAGGATAATTAGATATCTTAATTCAGAAAAAGGTGGACGGGTTACTTTTATACCATTGAACCGGGTGAAGGCTCCACATGTAACTTATCCGCACAGTTCTGATGTGGTACCTCTTTTAAAGAAACTGAAATTCTCTTCCCATCATACTCAAGCTTTTCAACAGGTATTTGGTAGAACAGTTATTTGTCGAGACTTGGATGTGGCCACTAAGGTTGCTCGCACTAATGGTTTGGACTGCATAACTCTGGAAGGTGATCAAGTGAGCAAGAAAGGTGGCATGACAGGGGGATTTTATGATTATAGGCGTTCCAAACTGAAGTTTATGGATGTCATTAGGCAAAACACAAAGTCTATCAACTTGAAGGAAGAGAAACTGGAAAAAATTAGAATGGATCTTGAAGAGATAGACCAGGAGGTTACTAAACTGGTCAGTGAACAGCAGAAAATTGATGCTAAGCAGGCTCATGAAAAGTCAGAGTTGGAACAACTTAGGCAGGATATTGCTAATGCTAATAAGCAAAAGCAGTCCATTTTAAAAGCTCTTGAAAAGAAGGAAAAGTTGCTTGCAAATGCCCATACTCAAATTGATCAGCTTAGAGCTGGTATGGCCATGAAACGGGCTGAAATGGGAACAGATCTTATTGATCACTTATCGCCAGAGGAAAAAGATCTTCTTTCTAGATTGAATCCTGAAATCACAGAACTGAAAGAGAAGCTTATTGCCTGCAAAACGGACCGGATAGAGACGGAAACAAGAAAAGGAGAGCTTGAGACTAATCTATCAACTAACCTTGTAAGACGGCAACAAGAGTTGGAGGCCATAAAATTTTCTGCAGACACTGACATGTTGCCTGGGGAAGCTGAACTAAAGAGGCAGGAACTAAAGGATGCTAAAGCATCTGTTGAAGATGCAACACAACAGCTTAAAAGAGTTTCGGTTAAAATAGATGAACTCACAAAGCAAATGAGGAGTATCAAGGATGAGAAAAACAAATTAAAGGCTCTGGAAGACAAGTATGAGCGGACACTACAGGATGAAGCAAAAGAACTAGAACAACTATTAAGTAAAAGGAATATTCTTCTTGTTAGACAAGAAGATTGCATGAAGAAAATCAGGGACTTGGGCTCATTACCATCGGATGCTTTTGAAATGTATAAGAGGAAGAGCATCAAAGAGCTGCATAAAATGCTTCACAAGTGCAATGAGCAACTACAGCAGTTTAGTCATGTAAACAAGAAAGCACTTGATCAATATGTCAATTTCACAGAGCAACGAGAAGAACTCCAGAAGAGGCAAGCTGAACTGGATGCAGGAGATGAGAAAATTAGGGAACTAATCTCAGTTTTGGATCAACGGAAGGATGAATCAATTGAACGTACGTTCAAAGGTGTTGCTAGACATTTCCGAGAAGCATTCTCTGAGCTTGTGCAAGGTGGCCATGGGTTCTTGGTTATGATGAAAAAAAAGGATGGTGATCATGGCGATGATGATCATGATGAGGACGGGCCACGTGAGGCAGACCCAGAGGGAAGGGTTGAGAAATACATTGGTGTGAAAGTGAAGGTTTCTTTTACTGGCCAAGGGGAAACACAGTCAATGAAACAACTGTCTGGGGGTCAGAAAACTGTTGTTGCCTTGACGCTGATCTTTGCAATACAGCGATGTGACCCTGCTCCTTTCTATCTTTTTGATGAGATTGATGCAGCATTAGATCCCCAGTACAGGACTGCTGTTGGAAACATGATTCGCCGCCTGGCAGACATGGCGAATACTCAGTTTATAACCACGACTTTCCGGCCAGAGCTTGTGAAAGTTGCAGACAAGATTTATGGGGTGACGCATAAGAACAGGGTTAGCCATGTGAATGTCATCTCTAAGGAACGAGCCCTAGATTTTATCGAGCACGACCAGACTCACAATACTGACTAA 3615 0.4097 MYIKQVIIEGFKSYKEQIATEPFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLRELDEEKEELKKYQQLDKQRRSLEYTIYDKELHDARQKLGEVEEARTKVSETSAKMYNDVLDAHEKSKDLEKEHKDLTKNIQVLNKEKEVIEKRRTEAIKKHAQVELDVRDLEEKTSGNIRAKEGAARELEVLQKIIQESRDELETIRSSYNDQVTKEEEITKGIMDREKQLSILYQKQGRATQFANKAARDKWLQKEIDDLQRVLSSNLEQEKKLQDEIQELKSGLQKQEVYIEERTAELGKLESHISKYHEGFNSLKKERDELQDKRKSLWEKESDLSAEIDKLKADVVKAEKSLDHATPGDIRRGLNSVRRLCRDHNIRGVFGPIIELLDCDEKFFTAVEVTAGNSLFHVVVETDEVSTRIIRYLNSEKGGRVTFIPLNRVKAPHVTYPHSSDVVPLLKKLKFSSHHTQAFQQVFGRTVICRDLDVATKVARTNGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMDVIRQNTKSINLKEEKLEKIRMDLEEIDQEVTKLVSEQQKIDAKQAHEKSELEQLRQDIANANKQKQSILKALEKKEKLLANAHTQIDQLRAGMAMKRAEMGTDLIDHLSPEEKDLLSRLNPEITELKEKLIACKTDRIETETRKGELETNLSTNLVRRQQELEAIKFSADTDMLPGEAELKRQELKDAKASVEDATQQLKRVSVKIDELTKQMRSIKDEKNKLKALEDKYERTLQDEAKELEQLLSKRNILLVRQEDCMKKIRDLGSLPSDAFEMYKRKSIKELHKMLHKCNEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREAFSELVQGGHGFLVMMKKKDGDHGDDDHDEDGPREADPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMANTQFITTTFRPELVKVADKIYGVTHKNRVSHVNVISKERALDFIEHDQTHNTD* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00665 1204 Coils Coil 849 918 - -
Eupl10g00665 1204 FunFam Structural maintenance of chromosomes 3 1 197 - -
Eupl10g00665 1204 Pfam RecF/RecN/SMC N terminal domain 2 1180 IPR003395 -
Eupl10g00665 1204 Coils Coil 260 315 - -
Eupl10g00665 1204 Coils Coil 680 707 - -
Eupl10g00665 1204 Pfam SMC proteins Flexible Hinge Domain 522 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl10g00665 1204 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1197 - -
Eupl10g00665 1204 Coils Coil 193 216 - -
Eupl10g00665 1204 Gene3D - 985 1196 IPR027417 -
Eupl10g00665 1204 Coils Coil 399 430 - -
Eupl10g00665 1204 Gene3D - 456 593 - -
Eupl10g00665 1204 Coils Coil 448 468 - -
Eupl10g00665 1204 SUPERFAMILY Smc hinge domain 466 675 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl10g00665 1204 FunFam Structural maintenance of chromosomes 3 985 1196 - -
Eupl10g00665 1204 CDD ABC_SMC3_euk 3 166 IPR041741 GO:0005524|GO:0016887
Eupl10g00665 1204 Gene3D - 1 178 IPR027417 -
Eupl10g00665 1204 SMART SMC_hinge_2 522 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Eupl10g00665 1204 PIRSF SMC 1 1193 IPR024704 GO:0005524|GO:0016887
Eupl10g00665 1204 Gene3D - 594 659 - -
Eupl10g00665 1204 Coils Coil 323 350 - -
Eupl10g00665 1204 Coils Coil 715 763 - -
Eupl10g00665 1204 Coils Coil 476 496 - -
Eupl10g00665 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1180 IPR027417 -
Eupl10g00665 1204 MobiDBLite consensus disorder prediction 1049 1072 - -
Eupl10g00665 1204 Coils Coil 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00665 Eupl-Chr10 25014233 25042591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00665 1030 1164 Structural Maintenance of Chromosomes family AT5G15920 26.812 9.11e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00665 K06669 - nnu:104595307 2033.84