Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00611 ATGAGTGCTCCTGCTCCTCCTCAACAATTCTTCCCCCAATCCTTTGCAGTCGGCATTGATGTGGTCGGATTCTGGCCTCAAATCCCAATTGACAACGAACAATCTGAGCCTACTTTCCGTGGAGAATTCCAGCCCTTCAAGAAACCCAGAAACTCGGAAGAAAACCCCTCGAATCCTTTCCCTAATCAAATTCTGAATCCAAGGATGCCCCATCCAAATCCCCCAGCTAACAAAGGGATAAGCAAAATTTTCTTCAAGACCCGTCTCTGCGCGAGATTCAAAGCGGGCACCTGCCCGTATGGGCTCAACTGCAACTTTGCCCATGGGGTCGAGGATGTCCGGAAGCCTCCTCCTAACTGGCAGGAAATCGTTGCTGCCCATGGGGAGGATCGGACAGGGAATTGGGATGAAGACCAGAGAATAATCAATAGGCTGAAACTCTGCAAGAAGTTTTATAATGGAGAAGAATGCCCATATGGGGAGAGGTGTAATTTTCTTCACGAAGATCCAGGGAAGTTTAGGGAGAGCACAGCGATAAGCATTGGGACTATAGGATCTCCTTGGGGCAATGGAAGTGGGTCTGATCAACCAGATAGTAATGGGGTTGTGAATTCCATCCTTGATGCTAACCGATTGAATGCAAAACCTGTGTTTTGGAAGACAAGGATCTGTAACAAGTGGGAAACAACGGGTCACTGCCCCTTCGGTGATAAGTGTCACTTTGCTCATGGACAAACAGAATTGCAGAAGTTTGGAGGCAACGATGAAGTAGAAACTGGGAATGCAAGCACAGCTCCATCGAAATCTCTTGCTAATCCTGCCAATGATGCATCACCAAGACAGACAGGTATAGGGACTTCTTGTAAGCAGTACATGCAGGTTAAGAAGTGCTTACTAAAGAGGAAAGGACCCGAGAAGATTAATCGCATCTATGCTGATTGGATTGACGATTTGCCACTTCTGTGGAGCTCACCAAGCAAAGTGGAGAGCTGA 993 0.4733 MSAPAPPQQFFPQSFAVGIDVVGFWPQIPIDNEQSEPTFRGEFQPFKKPRNSEENPSNPFPNQILNPRMPHPNPPANKGISKIFFKTRLCARFKAGTCPYGLNCNFAHGVEDVRKPPPNWQEIVAAHGEDRTGNWDEDQRIINRLKLCKKFYNGEECPYGERCNFLHEDPGKFRESTAISIGTIGSPWGNGSGSDQPDSNGVVNSILDANRLNAKPVFWKTRICNKWETTGHCPFGDKCHFAHGQTELQKFGGNDEVETGNASTAPSKSLANPANDASPRQTGIGTSCKQYMQVKKCLLKRKGPEKINRIYADWIDDLPLLWSSPSKVES* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00611 330 Gene3D - 80 115 - -
Eupl10g00611 330 Gene3D - 144 174 - -
Eupl10g00611 330 Gene3D - 213 250 - -
Eupl10g00611 330 SUPERFAMILY CCCH zinc finger 215 249 IPR036855 GO:0046872
Eupl10g00611 330 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Eupl10g00611 330 PANTHER CCCH ZINC FINGER/TIS11-RELATED 210 297 IPR045877 GO:0003729
Eupl10g00611 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 245 IPR000571 GO:0046872
Eupl10g00611 330 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Eupl10g00611 330 MobiDBLite consensus disorder prediction 33 73 - -
Eupl10g00611 330 SUPERFAMILY CCCH zinc finger 143 169 IPR036855 GO:0046872
Eupl10g00611 330 MobiDBLite consensus disorder prediction 252 283 - -
Eupl10g00611 330 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Eupl10g00611 330 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Eupl10g00611 330 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Eupl10g00611 330 FunFam Zinc finger CCCH domain-containing protein 213 250 - -
Eupl10g00611 330 MobiDBLite consensus disorder prediction 256 283 - -
Eupl10g00611 330 FunFam Zinc finger CCCH domain-containing protein 79 115 - -
Eupl10g00611 330 Pfam CCCH-type zinc finger 146 167 IPR041367 -
Eupl10g00611 330 SMART c3hfinal6 143 169 IPR000571 GO:0046872
Eupl10g00611 330 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Eupl10g00611 330 SMART c3hfinal6 218 245 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00611 Eupl-Chr10 24221265 24224705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00611 218 249 C3H Transcription Factor Family AT1G68200 59.375 6.22e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl10g00611 zf-CCCH 6e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00611 - - nnu:104595347 490.73