Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00604 ATGGAGGATGAAATACAGAAGAGAAACACCGACTGCGTTTATTTCTTGGCGTCTCCCCTCACCTGCAAGAAGGGAATTGAATGTGAGTATCGGCATAGCGAGAGCGCAAGGCTTAATCCGAGGGATTGCTGGTACTGGCTGGCTGGGAATTGCCTCAACCCGACTTGTGCTTTTCGACATCCGCCATTAGATGGACGCCCTGAAACTTCATCGGAGCCTGCTGCTTTGCCACAGCAATTATCTGTACCCATGACCAAGGCCAACGTCCCTTGTTATTATTATTTCAACGGGTTTTGCAACAAGGGCGACAAATGCTCTTTCCTGCATGGTCCCAACAGCATTTCACCTACTTTGAAATCCTCAAGGACAGCTTCCACACTTACCGATGTTCATCCTCTGGAAAATAAGACATCCACAGGAAGTGATACAGGGCCAGCATCAGCTGAAGCTCCTCCTAACCCATCTGGGACCACCACAAAGGCAGTGATGAATGTACAGTTTCAGACTAAAGAGGATTTCCAACCATCAGTTTTTAGTAATGTTGTGGAGCGAAGCCCCTCTCCACAGATATCAATGTTTGAGTGTGAAGAGGCAGCAGTCAAGTCAGACACCCTGCTTCCAGCAGAAGACTTTGTTGATACCAGATCCCCTCCATGCCTGGACCAGAGTTCAGAGGAGGCAGTAGATGATCACATTGAACCAGAGGAGTGGTGGGAATCATCCCCGGGGTTGGACGTACTTGTGGATGATGGATCGGAGAATTTGGGCTACATGGATGACCCAGAGTACTTACTCGTCCGGGAAAGGGAGGCCAGGGGGTTCCATAACCATTTACTGCCGTATGATTATGAAGATCCAGTTGGTTATGATCCTATGGAATACCCAGATGCAGGAATTTTGTACGAACATGGGATATATGGCTCAAATGATCATTTGGAGAATGATCATGCTTCTGATTATGTCCGGAGAGTTCCCGAGCACTCAATGGAGAGGATGTTGGATCCTATGTTGTCCCAGAAGAGGAAATTCTTGCATAGGGAACTGGAAGTTAATGGCCGGAACAGCATGGATCTTCGGGACCACCTAAGGAAACGCAGGAGGATCGACAGTCATCAAGCATCCCGCAAGCCAAGAAGGCGTGGCTCATCTCGTCTGAATGACAGGAGTCAAGAACGGCCTCGAAGGCACGGTAGGGGCCATCCTCTCCATGGAAAATTGGCATCGGAGGTGGGGAAAAATATGGTTGGGTCGCACAGAGAGAAAGATTCCGAGTTAAATGGCAGTCACCAAGGAAGCTGGTTGAGGCACTCAGAGACTAGGCGTAACAGGTCGAGGCAACATGAGAAGGAAAGAAGGCAGGCTAGATCACACTTTCTTTCCTCTGAGGTTTCCAGGGGCCCGGCTCCAAGGGCGACAAAACCGACTCAGGAATCTAGTACATTTACAGGACCGAAGACCCTTGCCCAGATCAAAGAAGAGAAACGAAAAGCCAGAGCAAATGAAGATGGTTTTGGAGACACAGGGTGTCAGAGCAGAACTATGTCTGAAGACTTGGAGGGGCCCAAACCTCTGAGCGGGATCCTGCAGGACAAAGGAAGGCTGGGTTCAGTGAGTGACGACAACACTAGCAAGAGATCAAAGCGTGATCGTGTTGAGCACGAGAGGAATCATGGTCATTTTGACAATGATGAGAACAATTTTGTAGATGAAGAAGATGAAGATGACGAAGGGCTTGAGAAGAAGCTGGGCAGCATATTCTCTTGA 1764 0.4887 MEDEIQKRNTDCVYFLASPLTCKKGIECEYRHSESARLNPRDCWYWLAGNCLNPTCAFRHPPLDGRPETSSEPAALPQQLSVPMTKANVPCYYYFNGFCNKGDKCSFLHGPNSISPTLKSSRTASTLTDVHPLENKTSTGSDTGPASAEAPPNPSGTTTKAVMNVQFQTKEDFQPSVFSNVVERSPSPQISMFECEEAAVKSDTLLPAEDFVDTRSPPCLDQSSEEAVDDHIEPEEWWESSPGLDVLVDDGSENLGYMDDPEYLLVREREARGFHNHLLPYDYEDPVGYDPMEYPDAGILYEHGIYGSNDHLENDHASDYVRRVPEHSMERMLDPMLSQKRKFLHRELEVNGRNSMDLRDHLRKRRRIDSHQASRKPRRRGSSRLNDRSQERPRRHGRGHPLHGKLASEVGKNMVGSHREKDSELNGSHQGSWLRHSETRRNRSRQHEKERRQARSHFLSSEVSRGPAPRATKPTQESSTFTGPKTLAQIKEEKRKARANEDGFGDTGCQSRTMSEDLEGPKPLSGILQDKGRLGSVSDDNTSKRSKRDRVEHERNHGHFDNDENNFVDEEDEDDEGLEKKLGSIFS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00604 587 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Eupl10g00604 587 Pfam Zinc-finger containing family 6 64 IPR041686 -
Eupl10g00604 587 MobiDBLite consensus disorder prediction 488 502 - -
Eupl10g00604 587 MobiDBLite consensus disorder prediction 537 564 - -
Eupl10g00604 587 MobiDBLite consensus disorder prediction 118 159 - -
Eupl10g00604 587 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 577 - -
Eupl10g00604 587 MobiDBLite consensus disorder prediction 365 382 - -
Eupl10g00604 587 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Eupl10g00604 587 SUPERFAMILY CCCH zinc finger 86 110 IPR036855 GO:0046872
Eupl10g00604 587 MobiDBLite consensus disorder prediction 355 587 - -
Eupl10g00604 587 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Eupl10g00604 587 MobiDBLite consensus disorder prediction 434 458 - -
Eupl10g00604 587 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Eupl10g00604 587 MobiDBLite consensus disorder prediction 471 486 - -
Eupl10g00604 587 SMART c3hfinal6 86 111 IPR000571 GO:0046872
Eupl10g00604 587 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Eupl10g00604 587 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Eupl10g00604 587 Gene3D - 2 63 - -
Eupl10g00604 587 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 111 IPR000571 GO:0046872
Eupl10g00604 587 Gene3D - 83 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00604 Eupl-Chr10 24143854 24148686 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl10g00604 zf-CCCH_3 4e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00604 - - tss:122650987 715.687