LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl10g00578	ATGCAAGAACAAGCGGCGAGTTCGCTCGCAACAAATTCGCTCCCTTCAAGCAGCGAGAGATCTTCAAGCTCTGCTCTTCAGCAAGAAATGAAAGACGGGGTTGAGAGCGACGATGAGATAAGGAGAGTGCCGGAAATCGGGAGCGAAGGCGTCGGTCAATCTACATCGGGCCGAGACGGGGGTTCAGTAGCCGGTCCAGACCGGGTTCAAGTATCAGCAGAAGGGGTTCAAAGAAAGAGAGGAAAAAGCCCAGCTGACAAAGAAAACAAACGGTTGAAAAGGTTGCTACGGAACAGAGTTTCAGCTCAACAAGCAAGGGAGAGAAAGAAGGCATACTTAAATGAGCTGGAGGTGAAGGTTAAGGAGTTGGAAAAGAAGAATTCTGAACTTGAAGAGAGGTTGTCCACGTTGCAAAATGAGAACCAGATGCTTAGACATATATTGAAGAATACAACTGGGAGCAGGAGAGGAGGGAATGGTAGTGCCAGTGCAGATGGCTCTCTGTGA	507	0.4872	MQEQAASSLATNSLPSSSERSSSSALQQEMKDGVESDDEIRRVPEIGSEGVGQSTSGRDGGSVAGPDRVQVSAEGVQRKRGKSPADKENKRLKRLLRNRVSAQQARERKKAYLNELEVKVKELEKKNSELEERLSTLQNENQMLRHILKNTTGSRRGGNGSASADGSL*	169

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl10g00578	168	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	93	108	IPR004827	GO:0003700\|GO:0006355
	Eupl10g00578	168	CDD	bZIP_HY5-like	91	142	-	-
	Eupl10g00578	168	FunFam	Transcription factor HY5	109	150	-	-
	Eupl10g00578	168	Gene3D	Single helix bin	109	150	-	-
	Eupl10g00578	168	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	88	151	IPR004827	GO:0003700\|GO:0006355
	Eupl10g00578	168	SUPERFAMILY	Leucine zipper domain	90	148	IPR046347	GO:0003700\|GO:0006355
	Eupl10g00578	168	Coils	Coil	85	147	-	-
	Eupl10g00578	168	MobiDBLite	consensus disorder prediction	149	168	-	-
	Eupl10g00578	168	Pfam	bZIP transcription factor	87	147	IPR004827	GO:0003700\|GO:0006355
	Eupl10g00578	168	SMART	brlzneu	86	150	IPR004827	GO:0003700\|GO:0006355
	Eupl10g00578	168	PRINTS	cAMP response element binding (CREB) protein signature	11	26	-	-
	Eupl10g00578	168	PRINTS	cAMP response element binding (CREB) protein signature	85	101	-	-
	Eupl10g00578	168	PRINTS	cAMP response element binding (CREB) protein signature	123	140	-	-
	Eupl10g00578	168	PRINTS	cAMP response element binding (CREB) protein signature	103	123	-	-
	Eupl10g00578	168	MobiDBLite	consensus disorder prediction	31	45	-	-
	Eupl10g00578	168	MobiDBLite	consensus disorder prediction	1	107	-	-
	Eupl10g00578	168	MobiDBLite	consensus disorder prediction	73	107	-	-
	Eupl10g00578	168	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	4	166	IPR044280	GO:0000981\|GO:0045944
	Eupl10g00578	168	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl10g00578	Eupl-Chr10	23818889	23821946	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl10g00578	1	147	bZIP Transcription Factor Family	AT5G11260	74.830	2.59e-60	183

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Eupl10g00578		bZIP_1	6.2e-14	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl10g00578	K16241		-	cave:132189408	199.519