Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00566 ATGACGATGTCTTGGGCCGATTCTGTTGCCGATGCAACCTCTGAATCATCTCGCCCGACCCGGGCTTCCTACGTCCCTCCGCATCTCAGAAACAAGAGTCTATCAGCTCCAGATTCTTCGCAGATTCCGTCCTCTCAGGAAGCTTCTCCTGGATTGAACCGTTCTGGAAGCAGAGAATTTGGGAGGCCGAGTCGGGGTCGATGGGGGGATCGCCGGAGGATAGGTCGTGATCCAAACCCATTCGATGTTACCGAGAAGTTTGCTGAACTGGAAGTATCCGAGGAGGATGAGGGTATTGGTGGTGGCGGGATCAATTTCGATGCCTACGAAGACATTCCAGTCGAGGTGAATGGAGCAGATGTGCCCTCGCCAGTCAATACCTTCGCGGAGATTGATCTAGGGGACGCACTGAACGAGAATATCAAGAGGTGCAAGTATGTGAAGCCGACACCAGTTCAACGCCATGCAATTCCCATTGCCATTGCTGGGCGAGACCTGATGGCGTGCGCGCAAACAGGGTCGGGAAAGACGGCAGCTTTCTGCTTTCCCATTATTAGTGGGATCATGAGGAACTCGTTACCGCAGCGGATGACACCTCGTGGTGCACGGACTGCTTACCCACTTGCTCTCATTCTCTCTCCCACCAGGGAGTTGTCTTGCCAGATACACGAGGAGGCGAAGAAGTTCTCTTATCAGACGGGTGTTAAGGTGGCTGTTGCATATGGGGGAGCACCAATTAATCAGCAGTTGCGTGAGTTGGAAAGAGGTGTTGACATCCTTGTTGCCACTCCTGGACGCTTAGTGGATTTAATTGAAAGAGCAAGAGTTTCACTTCGAATGATAAAGTATTTGACCTTGGATGAGGCTGACCGGATGTTGGATATGGGCTTCGAGCCCCAGATCCGGAAGATTGTTGAAAAGATGGACATGCCTCAATCAGGTGCTCGGCAGACGATGCTTTTTAGCGCCACCTTTCCATCTGATATACAGAGATTGGCTTCCGATTTCCTCACAAACTACATTTTCTTGGCTGTTGGAAGGGTTGGTTCAAGCACTGACCTAATTGCACAAAGAGTTGAATTTGTCCAGGAGATGGACAAAAGGAGCCACCTAATGGATCTTCTCCATGCCCAAAGAGCAAATGGAACCCATGGCAAGCAAGCTTTGACTTTAGTATTTGTTGAGACGAAGAGAGGAGCAGATGCTTTAGAGCACTGGCTGTCTGTGAATGGTTTTCCTGCAACAGCAATACATGGTGACAAAGTTCAAATGGAGAGAGAACACGCTCTAAGAGCCTTCAAGAGTGGTTCGAAGCCAATTATGGTAGCAACAGACGTAGCTGCACGAGGCTTGGACATACCGCACGTTGCACATGTCATCAATTTTGACTTGCCAAAAGACATCGACGACTACGTGCACCGTATAGGGCGGACAGGTCGTGCTGGTAAGTCTGGTCTAGCAACAGCATTCTTTAATGAAGGAAACCAGCCCCTGGCAAAGGCACTTTCTGAACTGATGCAGGAAGCAAACCAAGAGGTTCCCCCTTGGCTCGATCAATACGCCGCAAGATCTTCTTATGGTGGTGGAGGAAGGAGCCGCAGGTTTGGTGGTGGCAGGTTTGGAGGCCATGACTACCGCAGGGATGCCCCTTCAAGGGGAGGGAACTATAACTACTCGAGCTCTTACAGGGGTGGAGGTGAGGTTGCTAGTGCTGCTCCTTATGTTGCTCCCTCACATGGATATGGTTTAGGACACGAGTCTATTGTTGCCAGTGGCTGGGATTAA 1785 0.5053 MTMSWADSVADATSESSRPTRASYVPPHLRNKSLSAPDSSQIPSSQEASPGLNRSGSREFGRPSRGRWGDRRRIGRDPNPFDVTEKFAELEVSEEDEGIGGGGINFDAYEDIPVEVNGADVPSPVNTFAEIDLGDALNENIKRCKYVKPTPVQRHAIPIAIAGRDLMACAQTGSGKTAAFCFPIISGIMRNSLPQRMTPRGARTAYPLALILSPTRELSCQIHEEAKKFSYQTGVKVAVAYGGAPINQQLRELERGVDILVATPGRLVDLIERARVSLRMIKYLTLDEADRMLDMGFEPQIRKIVEKMDMPQSGARQTMLFSATFPSDIQRLASDFLTNYIFLAVGRVGSSTDLIAQRVEFVQEMDKRSHLMDLLHAQRANGTHGKQALTLVFVETKRGADALEHWLSVNGFPATAIHGDKVQMEREHALRAFKSGSKPIMVATDVAARGLDIPHVAHVINFDLPKDIDDYVHRIGRTGRAGKSGLATAFFNEGNQPLAKALSELMQEANQEVPPWLDQYAARSSYGGGGRSRRFGGGRFGGHDYRRDAPSRGGNYNYSSSYRGGGEVASAAPYVAPSHGYGLGHESIVASGWD* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00566 594 Pfam Helicase conserved C-terminal domain 367 482 IPR001650 -
Eupl10g00566 594 FunFam ATP-dependent RNA helicase RhlB 346 525 - -
Eupl10g00566 594 MobiDBLite consensus disorder prediction 526 556 - -
Eupl10g00566 594 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 521 - -
Eupl10g00566 594 FunFam Probable ATP-dependent RNA helicase DDX4 91 345 - -
Eupl10g00566 594 Pfam DEAD/DEAH box helicase 150 332 IPR011545 GO:0003676|GO:0005524
Eupl10g00566 594 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 521 IPR001650 -
Eupl10g00566 594 CDD SF2_C_DEAD 355 491 - -
Eupl10g00566 594 MobiDBLite consensus disorder prediction 60 80 - -
Eupl10g00566 594 SMART helicmild6 401 482 IPR001650 -
Eupl10g00566 594 MobiDBLite consensus disorder prediction 1 21 - -
Eupl10g00566 594 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Eupl10g00566 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 498 IPR027417 -
Eupl10g00566 594 CDD DEADc_DDX3_DDX4 127 349 IPR044763 GO:0003724|GO:0005524
Eupl10g00566 594 MobiDBLite consensus disorder prediction 33 53 - -
Eupl10g00566 594 MobiDBLite consensus disorder prediction 1 80 - -
Eupl10g00566 594 Gene3D - 346 526 IPR027417 -
Eupl10g00566 594 SMART ultradead3 145 358 IPR014001 -
Eupl10g00566 594 Gene3D - 86 345 IPR027417 -
Eupl10g00566 594 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 343 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00566 Eupl-Chr10 23652556 23659228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00566 108 514 Eukaryotic Initiation Factors Gene Family AT3G19760 30.024 1.36e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00566 K11594 - ming:122077265 890.182