Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00551 ATGCCATTGGCATCGAATCAAACCCCAAAACAACCACCAGTTAATTGCAGCTGTCCAGCTGATCACGACGAGTTCACATGGCACATGGACTACACTGTCCAACCTGGGGATTCATGGGAAGTCGTTTCATCAAAATTTGGGTCATTTGTCATGGAGAAGCCGGAGAAACAGCTAATCGCATCACTGATGGTAATCCTAGATGTCTTGTGCGGTTGTTCACGGAGTGTGCAGATTGTAACTTACAGAGTCGAAGCTGGGGATACAATATACACAATTTGTTCTCGTTTTGGGGCCAACGTAGACCAGACCACCCAATTGAATAAATTGGAAAATCCAGGGCTTATCCACGATGGAGATATACTTTTCATCCCTGCATCAGGCCTTGAAAGGCTTATCTCACCCAATAAGAAAGATTCACGAGCCAGAAAAATGTCAAATGCTCAAATTCATATTATTCTGGTAGCCATTGTAGCAGCTGCAGCAGTAATGCTACTATTATTCTCAATTCTTTTTTGGATGTTCTACCACAAGAGGAAGGGAAGAGAACAATCAAGAGAAACTGCTAGTGGAACAAAATGCTTGCCTTGTTGCCCAACTTTGTTCCTATCCAATACAAAATCCAAACAGAATTTGGTCCCCTTAATTAATACAGATAAAGCAACTGTTTTTCCATACCATGAAGTTCGTGATGCAACTTCTAATTTTAGTACATCAAAAAAGATTGGCCAGGGATCTTACGGATCCGTTTTCCTTGGACGACTAAGAGGAACTGATGTGGCCGTCAAGCAGATGAAGAACACAAAGTCAAAGGAGTTCTTGGCAGAACTCAACATTCTCTGCAAAGTTCATCATACAAACTTGATTGAGCTCATTGGATATGCGGCTGGAGGAGACTCTCTGTTCCTTGTATACGAATTTGCACAAAATGGTGCATTAAGTGATCATTTGCACAACCCCAGTATAAAAGGTTATGCATCACTTTCGTGGACTAGAAGAGTTCAGATTGCTCTCGATGCAGCAAAAGGTCTTGAGTATATACACTTGCACACAAAACCATACTATGTCCACCGAGATGTGAAGACGAGCAATATTCTCTTAGATTCCCATTTTCGTGCAAAGATTGCCGATTTTGGACTGGTTAAATTACTTGAGCATTCTCCAGAAATTGGAGCTGCGACATCTAAAATTGTTGGAACATTTGGCTATCTTGCTCCAGAGTATGTTCGAGATGGACGTGTGACAACAAAGAGCGATGTCTATAGCTATGGGGTCGTTCTTATGGAACTGCTTACTGGTCAGCCGGCACTTAGTAGAAATGCAAGTTCTGGAAATGCACAGTACATCGAGCATCGTTCTGTGGTGGATTTTATGCTATCAGCCTTAGAAGATGACTGTGATCCATTGAGCCAGTTGACACAATGCATTGATCCAAATCTCACTCACTACCACAAAGATTCTGTTTTTCAGATGGCTCTCTTGTCCAAGGACTGCGTGGACGATGACTGGAACCGGCGCCCAGACATGTGCAAAGTTGTCCTCCGCCTCTCACACATCCTAGCTTGCACAATGCAGTGGGAAGGAAAATAG 1587 0.4285 MPLASNQTPKQPPVNCSCPADHDEFTWHMDYTVQPGDSWEVVSSKFGSFVMEKPEKQLIASLMVILDVLCGCSRSVQIVTYRVEAGDTIYTICSRFGANVDQTTQLNKLENPGLIHDGDILFIPASGLERLISPNKKDSRARKMSNAQIHIILVAIVAAAAVMLLLFSILFWMFYHKRKGREQSRETASGTKCLPCCPTLFLSNTKSKQNLVPLINTDKATVFPYHEVRDATSNFSTSKKIGQGSYGSVFLGRLRGTDVAVKQMKNTKSKEFLAELNILCKVHHTNLIELIGYAAGGDSLFLVYEFAQNGALSDHLHNPSIKGYASLSWTRRVQIALDAAKGLEYIHLHTKPYYVHRDVKTSNILLDSHFRAKIADFGLVKLLEHSPEIGAATSKIVGTFGYLAPEYVRDGRVTTKSDVYSYGVVLMELLTGQPALSRNASSGNAQYIEHRSVVDFMLSALEDDCDPLSQLTQCIDPNLTHYHKDSVFQMALLSKDCVDDDWNRRPDMCKVVLRLSHILACTMQWEGK* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00551 528 SUPERFAMILY LysM domain 79 124 IPR036779 -
Eupl10g00551 528 SMART LysM_2 80 124 IPR018392 -
Eupl10g00551 528 Gene3D LysM domain 76 129 IPR036779 -
Eupl10g00551 528 ProSiteProfiles Protein kinase domain profile. 235 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00551 528 FunFam PTI1-like tyrosine-protein kinase 3 307 528 - -
Eupl10g00551 528 CDD LysM 79 123 IPR018392 -
Eupl10g00551 528 Gene3D Phosphorylase Kinase; domain 1 213 306 - -
Eupl10g00551 528 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 13 526 IPR044812 GO:0019199|GO:0045087
Eupl10g00551 528 Pfam Protein kinase domain 236 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00551 528 ProSitePatterns Protein kinases ATP-binding region signature. 241 262 IPR017441 GO:0005524
Eupl10g00551 528 Gene3D Transferase(Phosphotransferase) domain 1 307 525 - -
Eupl10g00551 528 SMART serkin_6 235 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl10g00551 528 Pfam LysM domain 81 124 IPR018392 -
Eupl10g00551 528 SUPERFAMILY Protein kinase-like (PK-like) 210 515 IPR011009 -
Eupl10g00551 528 ProSiteProfiles LysM domain profile. 79 123 IPR018392 -
Eupl10g00551 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00551 Eupl-Chr10 23442267 23455996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00551 15 527 Receptor kinase-like Gene Family AT1G51940 38.475 2.83e-118 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Eupl10g00551 Pkinase 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00551 - - csin:114307417 702.205