Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00545 ATGGGAGAAGCAAGGGACAACGATGCTTACGAGGAAGAGCTTCTCGACTACGAAGAGGATGAAGACAAGGCCCCCGATTCCGTGGCGGCCAAGGGTGCCGGAGAAACAGTGAAGAAGGGCTATGTTGGAATCCACAGTTCGGGATTCAGAGATTTTCTTTTGAAGCCGGAGCTCCTTCGAGCTATTGTAGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAGTGCATCCCTCAAGCTATCTTAGGGATGGATGTCATCTGCCAAGCTAAATCTGGGATGGGGAAAACTGCTGTATTCGTTCTGTCGACTTTGCAACAAATTGAGCCTGTGGCAGGACAGGTTGCTGCACTTGTTTTATGCCATACAAGAGAATTAGCTTACCAGATTTGTCATGAGTTTGAGAGGTTCAGTACCTACTTGCCCGATATTAAGGTTGCTGTCTTTTATGGTGGTGTCCACATAAAAAATCACAAAGATTTACTTAAAAATGAGTGTCCACATATTGTTGTTGGAACACCTGGGAGGATATTGGCCCTGGCCAGAGACAAGGACCTTGCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAATGTGACAAGATGCTGGAGTCACTTGACATGCGGAGAGATGTGCAAGAGATTTTCAAGATGACCCCTCATGATAAGCAAGTTATGATGTTTTCAGCAACACTCAGCAAGGAGATCCGCCCTGTTTGCAAGAGATTTATGCAAGATCCAATGGAAATTTATGTGGACGATGAGGCCAAGTTGACCCTACATGGTCTTGTACAGCACTACATAAAATTGAGTGAACTGGAGAAAAACCGCAAGTTGAATGATCTCCTTGATGCGTTGGACTTCAATCAAGTTGTCATCTTTGTTAAAAGCGTGAATAGAGCAGCTGAGCTGAATAAGTTACTCGTGGAATGTAACTTTCCATCCATTTGCATCCATTCTGGAATGTCACAGGAAGAAAGGTTGACACGCTACAAGGGTTTCAAGGAGGGACACAAGAGGATTCTCGTGGCAACGGATTTGGTTGGCAGGGGGATAGATATTGAGCGCGTCAACATCGTGATCAACTATGACATGCCGGATTCTGCTGACACCTACCTGCATAGGGTGGGTAGAGCTGGTCGGTTTGGTACCAAAGGGCTTGCAATTACATTTGTGTCATCTGCTTCTGACTCTGATGTTCTTAATCAGGTGCAAGAGAGGTTTGAGGTGGACATAAAGGAGCTCCCCGAGCAAATCGATACCTCTACATACAGTATGCCTGCTTTCCCTCATTCTTTTTGTTCTATTTATGTAGCAGTTATGAAAGTCAGTATGTCGTTTAAGCACGTGTGTCTGGATGATATAGCAAAATAA 1377 0.4459 MGEARDNDAYEEELLDYEEDEDKAPDSVAAKGAGETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYSMPAFPHSFCSIYVAVMKVSMSFKHVCLDDIAK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00545 458 MobiDBLite consensus disorder prediction 9 23 - -
Eupl10g00545 458 Pfam DEAD/DEAH box helicase 72 237 IPR011545 GO:0003676|GO:0005524
Eupl10g00545 458 MobiDBLite consensus disorder prediction 1 27 - -
Eupl10g00545 458 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 279 424 IPR001650 -
Eupl10g00545 458 SMART helicmild6 303 384 IPR001650 -
Eupl10g00545 458 SMART ultradead3 66 267 IPR014001 -
Eupl10g00545 458 Gene3D - 43 259 IPR027417 -
Eupl10g00545 458 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 47 75 IPR014014 GO:0003724
Eupl10g00545 458 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 406 - -
Eupl10g00545 458 CDD SF2_C_DEAD 264 393 - -
Eupl10g00545 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 401 IPR027417 -
Eupl10g00545 458 FunFam DEAD-box ATP-dependent RNA helicase 56-like 35 253 - -
Eupl10g00545 458 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 251 IPR014001 -
Eupl10g00545 458 Gene3D - 260 427 IPR027417 -
Eupl10g00545 458 Pfam Helicase conserved C-terminal domain 277 384 IPR001650 -
Eupl10g00545 458 CDD DEADc_DDX39 46 253 - -
Eupl10g00545 458 FunFam DEAD-box ATP-dependent RNA helicase 260 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00545 Eupl-Chr10 23320444 23331188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00545 1 429 Eukaryotic Initiation Factors Gene Family AT5G11200 84.468 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00545 K12812 - msin:131217269 817.764