Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00529 ATGGTACAATCAAAGAAGTTCAGAGGCGTCAGGCAACGCCACTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCATTACTGAAGAGAAGGGTCTGGCTAGGCACATTCGAAACAGCAGAGGAGGCAGCTCGTGCTTACGATGAAGCAGCTATCTTAATGAGTGGTCGAAATGCCAAGACTAACTTCCCCACAGTCAAGACTCCAGCTGGGGATCCAAAGACTGCTACTGATCATGTCTCCCCGTCGTCGTCTCCAACGGGTCTTTCGGCTATCCTTAGCGCGAAGCTTCGAAGGTGTTGTAAGGCCCCGTCGCCTTCCCTCACTTGTCTGAGGCTTGACACTGAGAATTCCCATATCGGAGTCTGGCAGAAGCGCGCCGGGGCTCGTTCGGATTCAAATTGGGTCATGACTGTTGATATTGGGAAGAAGAATGCAGAATCGTCGGTAGGGTCATCGTCATCGTCATCATCATCGTCGTTGTTGCCAGAGACGCCGATAACAGGTCAGGCCGACGTCGGAAATGGGATGGATGAAGAAGAGAGGATTGCCTTACAGATGATAGAAGAACTCCTAAACAGGAATTGTCCTAGTCCTTCAACTTCACATGGGGTTCTTGAAGGGGAGGGGGTCTCTCATGTGTAG 642 0.514 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPTVKTPAGDPKTATDHVSPSSSPTGLSAILSAKLRRCCKAPSPSLTCLRLDTENSHIGVWQKRAGARSDSNWVMTVDIGKKNAESSVGSSSSSSSSSLLPETPITGQADVGNGMDEEERIALQMIEELLNRNCPSPSTSHGVLEGEGVSHV* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00529 213 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Eupl10g00529 213 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Eupl10g00529 213 MobiDBLite consensus disorder prediction 62 86 - -
Eupl10g00529 213 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 151 - -
Eupl10g00529 213 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Eupl10g00529 213 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Eupl10g00529 213 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Eupl10g00529 213 MobiDBLite consensus disorder prediction 144 165 - -
Eupl10g00529 213 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Eupl10g00529 213 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Eupl10g00529 213 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Eupl10g00529 213 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Eupl10g00529 213 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00529 Eupl-Chr10 23121351 23122401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00529 1 194 AP2-EREBP Transcription Factor Family AT1G15360 65.672 5.01e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl10g00529 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00529 - - msin:131256376 295.049