Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00496 ATGGAGCTTCAACTGGGTCTCGCGCTCCCAAGCAATTCAATCAATGGGTTCGACCTAAACAATGATGTTTACGAGCCAAAAGAGATGTTGGGTTCCGAAACATGGAGCCATGATCGCTGTTTGGGAAGCAAAAACAACAAGCGCAGTTTCTACGAGGCCTTTGAGAAAACCAAACCTGTAACGCAAACACTACCTTTACTGTCATGGAACGACCAGCCAAACGATGAAGATGATCGTAAGAGTTTCGAGAAGAGCTCCTCTTACACCACGGTTGATGAAGAGGAAAATGGGGTTGTGGGATGGCCACCAATCAAATCCTGGAGGAAAAAGATTCACCAATATCAGTATGGTGATAATCAGAGGGTTGGAAATGGTTGTGATGGATCAAACTCCATGCATGTGAAGGTGACGATGGAGGGGGTTGCCATTGGAAGGAAGGTTGATCTTAGTCTCCATCAATCTTATCAGATGCTTAGGACCACCTTGATTGGAATGTTTGGGAAATACCAGAAAATTGTGAAGGGACCCAAAGATGGTACAGGTTATACACTCACTTATCAAGACAAAGAAGGAGATTGGCTGCTTGTCGGAGATGTACCTTGGCAGACTTTCATCCAAACGGTGCAACGTCTCAAGATACTAAGGAGTGGCGGTCGATAG 660 0.453 MELQLGLALPSNSINGFDLNNDVYEPKEMLGSETWSHDRCLGSKNNKRSFYEAFEKTKPVTQTLPLLSWNDQPNDEDDRKSFEKSSSYTTVDEEENGVVGWPPIKSWRKKIHQYQYGDNQRVGNGCDGSNSMHVKVTMEGVAIGRKVDLSLHQSYQMLRTTLIGMFGKYQKIVKGPKDGTGYTLTYQDKEGDWLLVGDVPWQTFIQTVQRLKILRSGGR* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00496 219 Gene3D - 126 218 - -
Eupl10g00496 219 ProSiteProfiles PB1 domain profile. 131 218 IPR000270 GO:0005515
Eupl10g00496 219 Pfam AUX/IAA family 37 216 IPR033389 -
Eupl10g00496 219 MobiDBLite consensus disorder prediction 72 89 - -
Eupl10g00496 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 216 IPR003311 GO:0005634|GO:0006355
Eupl10g00496 219 MobiDBLite consensus disorder prediction 67 89 - -
Eupl10g00496 219 SUPERFAMILY CAD & PB1 domains 128 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00496 Eupl-Chr10 22360979 22364260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00496 129 216 B3 DNA Binding Superfamily AT2G46530 39.773 7.61e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl10g00496 AUX_IAA 1.1e-40 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00496 K14484 - nnu:104586117 253.832