Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00392 ATGGCGATAGAAGCCAACGAAGATGTAGAAGCTCCGCCTATGAGCGAGCCACTACTGGACCATCACAACCAGTTACTGTTTCGTCGATCCACCTCGAACACTACTTCACAGGTTGCGATCGTTGGCGCAAAAGTATGCCCGATCGAGAGCTTGGATTACGAGATAATTGAGAACGATTTCTTCAAGCAGGATTGGAGGAGCCGCCGAAAGATCCAAATTTTCCAGTATATATTCATGAAGTGGACGTTATGTTTCCTCATCGGTATTTTAGCTGCCCTCGTCGGATTCTTCAACAACCTTGCCGTCGAGAACATTGCAGGAATTAAGTTTGTGGTTACGTCAAATATGATGTTGGCGAGGAAGTTTTGGTTTGCTTTTGGGGTTTTTGCGGTTTCTAACTTCGTTCTCACTCTGTTCTCATCGATCATCACGGCTTTTATAGCGCCCACGGCAGCTGGCTCTGGTATACCAGAAGTCAAGGCTTACTTGAATGGCGTGGACGCCCCTGGAATTTTTTCTCCACGGACTCTGGTCGTAAAAATAATTGGTAGCATTTTTGCTGTGTCATCATCTCTCTATGTGGGCAAGGCAGGGCCCATGGTGCATACTGGTGCATGCATTGCAGCATTACTGGGCCAGGGTGGATCCAAGAATTATGGTTTGACGTGGAAATGGCTACGTTTTTTTAATAATGACAGAGATAGGCGTGATCTTGTAACGTGTGGATCAGCTGCTGGAATTGCTGGTGCTTTCCGTGCACCAGTTGGTGGTGTTCTGTTTGCTCTCGAAGAAATGGCATCATGGTGGAGAAGTGCTCTTCTTTGGAGAACTTTCTTTACAACAGCTGTGGTCGCTATCGTGCTCAGGAGTCTGATTGACGTTTGTTATAGTGGCAAGTGTGGGTTATTCGGTCAGGGGGGGCTGATAATGTATAATGTGACCTCAGAAAATGTTTCATATAATCTTGCTGATGTACCCGCTGTGCTCCTTCTTGGACTTATTGGAGGCATATTGGGAAGTTTCTACAATTGTCTTTTGGATAAGGTCCTCCGGATTTACAATCTCATTAATGAGAAAGGCCCTGCTCACAAAATAATTCTTGCTTGCTCAATCTCTATTTTCACATCCTGTCTTCTATTCGGATTACCATGGCTCGCATCTTGCCGACCTTGCCCAACTGATGCATCTGAAGCTTGCCCAACAATTGGCAGGTCTGGGAACTACAAGAAGTTTCAATGTTCTCCTGGTCATTACAATGATCTCGCCAGCCTTTTTTTCAACACAAACGATGACGCAATAAAAAATCTTTTCAGCAAGGACACTGACAACGAGTTCAACCACGCATCGATCCTAATCTTCTTTGTCACCTCCTATTTTCTTGGTATCTTGAGTTATGGGATTGTGGCTCCTGCAGGTCTATTCGTGCCTGTTATTGTGACGGGGGCGAGTTATGGACGCTATATTGGAATTCTGATGGGCTCGCATTCGAGCCTCAACCATGGCCTATTTGCTGTGCTGGGGTCTGCTTCCCTTCTTGGTGGTTCTATGAGGATGACGGTGTCCTTGTGTGTTATTCTCTTGGAGCTTACCGACAATTTGTTATTGCTGCCCCTGATAATGCTAGTTCTACTTGTATCGAAAACTGTAGCTGACACTTTCAACAGCAATGTCTATGATCAAATCATGAAATTGAAGGGGTTTCCTTACCTAGAAACTCATGTAGAGCCGTACATGAGGCAGCTAGCAGTTGGTGATGTTGTCACAGGCCCGCTTCAGTTATTTAACGGCATCGAGAAGGTCCGTAATATAGTACACGTCCTCAAAACTACAGGCCATAACGGGTTCCCCGTGATTGACGAGCCTCCGGTTTCGGATGCCCCCATATTGTTCGGCCTAGTCCTTAGGGCCCACCTTATTCTGTTGCTAAAGAAGAAAGCTTTCTTGCCCATACCGGTGCCCACAGGCATTGATGCCTTCAAACAACTTTCTGCCAATGATTTTGCAAAGCGGGGTTTAGGCAAAGGGGACAAGATCGAAGATATAGAAGTGACTGAGGAAGAGATGGAGATGTTTATAGATTTGCATCCATTTACAAACGCTTCACCATATACTGTCGTGGAGACAATGTCACTAGCAAAGGCTCTCTTACTCTTCCGAGAAGCTGGTTTAAGGCACCTCTTGGTTGTACCGAAGACCTCTAGTAGATCACCAGTGGGGGGAATATTGACGAGGCATGATTTTATGCCTGAGCATATATTTAGGTTGCATCCATTCCTGGCGAGGAGCAGGTGGAAGAGATTGCGATTCCGGCTCTCTCGTTAA 2322 0.4587 MAIEANEDVEAPPMSEPLLDHHNQLLFRRSTSNTTSQVAIVGAKVCPIESLDYEIIENDFFKQDWRSRRKIQIFQYIFMKWTLCFLIGILAALVGFFNNLAVENIAGIKFVVTSNMMLARKFWFAFGVFAVSNFVLTLFSSIITAFIAPTAAGSGIPEVKAYLNGVDAPGIFSPRTLVVKIIGSIFAVSSSLYVGKAGPMVHTGACIAALLGQGGSKNYGLTWKWLRFFNNDRDRRDLVTCGSAAGIAGAFRAPVGGVLFALEEMASWWRSALLWRTFFTTAVVAIVLRSLIDVCYSGKCGLFGQGGLIMYNVTSENVSYNLADVPAVLLLGLIGGILGSFYNCLLDKVLRIYNLINEKGPAHKIILACSISIFTSCLLFGLPWLASCRPCPTDASEACPTIGRSGNYKKFQCSPGHYNDLASLFFNTNDDAIKNLFSKDTDNEFNHASILIFFVTSYFLGILSYGIVAPAGLFVPVIVTGASYGRYIGILMGSHSSLNHGLFAVLGSASLLGGSMRMTVSLCVILLELTDNLLLLPLIMLVLLVSKTVADTFNSNVYDQIMKLKGFPYLETHVEPYMRQLAVGDVVTGPLQLFNGIEKVRNIVHVLKTTGHNGFPVIDEPPVSDAPILFGLVLRAHLILLLKKKAFLPIPVPTGIDAFKQLSANDFAKRGLGKGDKIEDIEVTEEEMEMFIDLHPFTNASPYTVVETMSLAKALLLFREAGLRHLLVVPKTSSRSPVGGILTRHDFMPEHIFRLHPFLARSRWKRLRFRLSR* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00392 773 FunFam Chloride channel ClC3 72 389 - -
Eupl10g00392 773 SUPERFAMILY Clc chloride channel 57 572 IPR014743 -
Eupl10g00392 773 PRINTS Chloride channel signature 501 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Chloride channel signature 519 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Chloride channel signature 180 199 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Chloride channel signature 149 166 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Chloride channel signature 244 263 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Chloride channel signature 469 489 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Chloride channel signature 557 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 PRINTS Plant CLC chloride channel signature 279 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl10g00392 773 PRINTS Plant CLC chloride channel signature 297 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl10g00392 773 PRINTS Plant CLC chloride channel signature 421 437 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl10g00392 773 PRINTS Plant CLC chloride channel signature 265 273 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl10g00392 773 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Eupl10g00392 773 SUPERFAMILY CBS-domain pair 574 748 IPR046342 -
Eupl10g00392 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 573 750 - -
Eupl10g00392 773 Pfam CBS domain 701 747 IPR000644 -
Eupl10g00392 773 Pfam Voltage gated chloride channel 137 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Eupl10g00392 773 Gene3D Clc chloride channel 72 571 - -
Eupl10g00392 773 CDD ClC_6_like 49 570 - -
Eupl10g00392 773 ProSiteProfiles CBS domain profile. 697 758 IPR000644 -
Eupl10g00392 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 29 754 - -
Eupl10g00392 773 Gene3D - 572 749 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00392 Eupl-Chr10 19759372 19779207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00392 29 771 Ion Channels AT5G33280 75.639 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00392 K05016 - nnu:104592520 1240.71