Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00358 ATGGGGAAGCCTTGTGGGAAGAAGAAGAAGAAGACTGTTGGAGGGAAATCTGGCGATGTGAAAATGAAGCAGAGCAAATCCGGAGAGCCAAACCCGAAAGCATTCGATAAGGACATGGCTATCTTTATCGCGATGTCTCAGGAATTGAAGGAGGAGGGGAACAAGTCATTTCAGAAGAGGGATCATGAAGGAGCCATGTTAAAGTATGAGAAAGCTCTCAAGTTGCTTCCGAGAAACCACATAGACGTAGCCTACCTCCGGAGTAACATGGCTGCTTGTTATATGCAGATGGGTCTTGGCGAGTATCCAAGGGCAATCAATGAGTGCAATTTGGCTCTAGAAGTCTCTCCCAAGTACAGTAAAGCCCTCTTGAAGAGGGCGAGGTGTTATGAAGCTCTGAATAAGCCTGAGTTGGCCTTGAGAGATGTTGATTTGGTTCTGAACGCGGAGCCGAATAATCTCACCGCATTGGAGATTGCGGAAAGGGTGAAAAAGGCACTTGAGAAAATGGGTATCAAGGTGGAGGAAAAAGGGATTATTTCGGCTCCCGAGTACATTGAACTTCCTTGTGCTTCACCTCCATGCAAAATAGCGAAAGAGAAAACAAGGAAGAAGAAGAGCAACAAAGCTATTGAGGAGAAGAAAGTCGAGGATAAGGTGGTTGTGGAGGAGAATGTTAGTAAAGTTAATGAAGAAGAAACAACAAGAACTGTGAAATTGTTGTTTGGGGAAGATATAAGGTGGGCCCAGGTACCAGCTGATTGTAGCATTCAGCAGCTGAGGGAAATAGTTCAAGATCGGTTTCCGAGCTTGAAGGCTGTTTTTATAAAATACAGGGATCAAGAAGGTGACTTGGTAACTATCACCTCTACCGAAGAGCTGAGATGGGCTGAAGCATCTGCTGAGCCACAGGGTTCTGTCAGGTTGTACATCGTAGAAGTTAATCCCAGGCAAGAGCCATTATTTGAGGGTGTAAAGAATGGGGAAGAGGTGCAAAAGGTCGAGATAAACCAACATAATGTCTCCGAAAATGGGAATGCAAGACAAGGTGGGGAAACGGAAAGGGATCGTCTTATATTGATGACTGGATTGTCCAATTTGCTCGGTTGTTCAAGAATCATGTCGGGTTTAATTCTGATGCGTATTTGGATCTTCATGAGATTGGGATAA 1170 0.447 MGKPCGKKKKKTVGGKSGDVKMKQSKSGEPNPKAFDKDMAIFIAMSQELKEEGNKSFQKRDHEGAMLKYEKALKLLPRNHIDVAYLRSNMAACYMQMGLGEYPRAINECNLALEVSPKYSKALLKRARCYEALNKPELALRDVDLVLNAEPNNLTALEIAERVKKALEKMGIKVEEKGIISAPEYIELPCASPPCKIAKEKTRKKKSNKAIEEKKVEDKVVVEENVSKVNEEETTRTVKLLFGEDIRWAQVPADCSIQQLREIVQDRFPSLKAVFIKYRDQEGDLVTITSTEELRWAEASAEPQGSVRLYIVEVNPRQEPLFEGVKNGEEVQKVEINQHNVSENGNARQGGETERDRLILMTGLSNLLGCSRIMSGLILMRIWIFMRLG* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00358 389 SMART tpr_5 120 153 IPR019734 GO:0005515
Eupl10g00358 389 SMART tpr_5 46 79 IPR019734 GO:0005515
Eupl10g00358 389 SMART tpr_5 84 119 IPR019734 GO:0005515
Eupl10g00358 389 CDD PB1 237 311 - -
Eupl10g00358 389 SUPERFAMILY CAD & PB1 domains 232 325 - -
Eupl10g00358 389 Gene3D Tetratricopeptide repeat domain 44 173 IPR011990 GO:0005515
Eupl10g00358 389 PANTHER PROTEIN CLMP1 1 354 IPR044517 -
Eupl10g00358 389 ProSiteProfiles TPR repeat profile. 46 79 IPR019734 GO:0005515
Eupl10g00358 389 MobiDBLite consensus disorder prediction 1 34 - -
Eupl10g00358 389 Gene3D - 232 312 - -
Eupl10g00358 389 SMART PB1_new 235 314 IPR000270 GO:0005515
Eupl10g00358 389 Pfam PB1 domain 235 313 IPR000270 GO:0005515
Eupl10g00358 389 ProSiteProfiles PB1 domain profile. 235 314 IPR000270 GO:0005515
Eupl10g00358 389 SUPERFAMILY TPR-like 35 169 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00358 Eupl-Chr10 19119822 19120991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00358 43 153 Calmodulin-binding Proteins AT3G25230 31.200 5.57e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00358 K26538 - psom:113282719 462.996