LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl10g00345	ATGGGAAGTAACGGCGCTGATGAAGTAATGCTTTCTGGGGGCAATGAAGCTGAATGTTCTGAGACCACAGTTGAGATAAAGATTAAAACATTGGATTCTCAAACATACACTTTGCGAGTGAATAAACGTATGCCGGTTCCTGCTTTGAAGGAACAGATCGAGACTGTTACTGGTGTATTATCAGAACAACAGCGCCTAATATGCCGTGGCAAAGTTTTGAAGGATGATCAACTCCTCTCAGCTTACCATGTGGAAGATGGTCACACTTTGCATCTGGTTGTCAGACAACCACTTCCCCCTTCATCGGCATCCACAATGAGCTTCTTGGGATCTGAGGGCTTACCCGTTAATCCAGCAACTGATCCTACAAGTACTGGACGTAGTCGAGGTAATCAGGCGGCTCATAGTGTAGTACTTGGAACCTTCAATATAGCTGATCAGGGGGATGGAGGTATACCAGATCTCAACCGGATTATTTCAGCTGTTCTCGGTTCTATTGGAATCACTAATAGTGGAAGTGGCAGTGAAGAGGTGGTTCTTAGGGAACCTGGCCCAGAAAGACTTGACAGAACATCTGGTGCTAGTGGTATGTCAGACTCAACCAGACGGCAACCTGACCAGACTACAATGTCTCAATTTGATACACTGCAAGGTGCTTTTCGACTTCCAACTGCAGCTTCTTTGGGCCCTCAGCAGCCGCCAGTTCTTGCTGATTCTTTGACGACTATGTCCCAGTATTTAAGCCATATGAGGCATGAATTCAGTGCCAATGGCAGAGGCCAGAGCAACAATGCTCAAGCTGCTGGCATGCATGGCAGTGAAGGATCAGGATATGATGCTGCGTCGCGTTTAGGTGCTGGACAAGGAGGGCTGCCAACACCAGCATCCTTGGCAGAAGTCATGTTGTCTACAAGACAAATGCTCATTGAACAAGCTGGAGAATGCCTATCTCAACTTGCGAGGCAACTGGAGGATGAGGCAAATATTACTAATTCGCTGGAGCGGACAAGCATTCAGGCTAGTGCAATGCGATTGGGAGTTCTATTGCAAAATTTAGGTGCTTTGATACTTGAGCTTGGCCGCTCAACCATGACATTGAGAATGGGCCAAACACCGTCCGAAGCTGTGGTTAATGCTGGACCCGCAGTTTTCATATCCACATCTGGTCCAAATCCCATAATGGTTCAGCCTCTTCCTTTTCAACCGGGAACAGGTTTTGGTGCAATCCCCATGGGAACTGTACATCCTGACTCTGGCTTGGTTGGTGGGCCTCTTGGTTCTGGGTTTCTCCCAAGGAATATTGACATACGGATTCGAACAGGGTCTTCAATGACAACAGCCAATGTTAACCAAGGCCAACAGGCTGGTGCACAGCAACCTCCAGGGCAAACAGATCCAGCAAGAAGTTCTGGTGGTGCAACTTTTGTTCATCAGGCAACTTCAGGAGTCTCAGGGGGTCCATCATTTACAGGAGAGTCTGGAGTACGGGTAGTGCCCATCAGGACTGTGGTTGCAGCTGTACCTGCTGCATCTAATCGCTCATCGTCTGATTCATCTGGTGGTTCATTAGGGTTATTCTATCCAGTTCTAGCAAGAGTTCAGCAGATAACTCCTGCGCATTTGAACAATACTAGAGGTTCCCAAGCATCTAGTGAACGTCACCCTAGTGTTCCTGAAACTGATCAGCAGCAGATCCCTGAATCTGCAGTGCGACTACAAAATTTAGGATCAAACAATGGAGCTCCTGTAAGAGATAGGAATTCACAGACAGCTATTCTATTTTCTACGAATGCTTCGTCTATAGTTTCTGAAATGAGTCCTTCAGCAAATACAGTCACTCAACATCATCAGCAAGGGACATTGCCTACTCCCAATTCAAGACAACAGGAGCCATCTGATTCTAATAATAACACTTTATTGAATGGTGGGGCTATAGATGGGCAAGAATCTGCAACACAGATTCCGAGCAGATTTGATCAGTTGCTAAGGACCATTTTTTCAGGAGAGCAAGTCCGTATTGGTAATGTCAACTTTCCGGGATTGGCTACTGGTTCTGCCACAGAGCAGGGTGGTACAACCGGAGATGCTGATACTCATGAGGCAGCACAGAGATCGGGTATTGATGAAGGAGTCTTCTTATCCACTTTGCTTCGTCAGATCATGCCTGTCATATCTCAAATTACATCTACGGAGCCAAATGTTGCTCCGCCGGAAAGAGCAGATACTTCTGAGAATAGAATTGTTCGAGATTCCTCAACACCAGTAAGCATGCTCCGCTCAAGCCCTTGCATTTGGCTTCTTCTAGTGGTCATGTTCCCTGTAACGAGAAGGGAAGGATATGTTTGGATTCTTGTTACATTTACCCGACGAAAGATTAGACATAAATCCAGCAATCGAATTTTCAAACTAAGCAATGAAACATGTGCAGGCTGA	2433	0.4632	MGSNGADEVMLSGGNEAECSETTVEIKIKTLDSQTYTLRVNKRMPVPALKEQIETVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPLPPSSASTMSFLGSEGLPVNPATDPTSTGRSRGNQAAHSVVLGTFNIADQGDGGIPDLNRIISAVLGSIGITNSGSGSEEVVLREPGPERLDRTSGASGMSDSTRRQPDQTTMSQFDTLQGAFRLPTAASLGPQQPPVLADSLTTMSQYLSHMRHEFSANGRGQSNNAQAAGMHGSEGSGYDAASRLGAGQGGLPTPASLAEVMLSTRQMLIEQAGECLSQLARQLEDEANITNSLERTSIQASAMRLGVLLQNLGALILELGRSTMTLRMGQTPSEAVVNAGPAVFISTSGPNPIMVQPLPFQPGTGFGAIPMGTVHPDSGLVGGPLGSGFLPRNIDIRIRTGSSMTTANVNQGQQAGAQQPPGQTDPARSSGGATFVHQATSGVSGGPSFTGESGVRVVPIRTVVAAVPAASNRSSSDSSGGSLGLFYPVLARVQQITPAHLNNTRGSQASSERHPSVPETDQQQIPESAVRLQNLGSNNGAPVRDRNSQTAILFSTNASSIVSEMSPSANTVTQHHQQGTLPTPNSRQQEPSDSNNNTLLNGGAIDGQESATQIPSRFDQLLRTIFSGEQVRIGNVNFPGLATGSATEQGGTTGDADTHEAAQRSGIDEGVFLSTLLRQIMPVISQITSTEPNVAPPERADTSENRIVRDSSTPVSMLRSSPCIWLLLVVMFPVTRREGYVWILVTFTRRKIRHKSSNRIFKLSNETCAG*	811

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl10g00345	810	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	13	754	-	-
	Eupl10g00345	810	Pfam	Ubiquitin family	26	96	IPR000626	GO:0005515
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	172	209	-	-
	Eupl10g00345	810	SMART	ubq_7	24	95	IPR000626	GO:0005515
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	450	488	-	-
	Eupl10g00345	810	Gene3D	-	17	106	-	-
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	255	270	-	-
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	450	492	-	-
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	543	564	-	-
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	193	209	-	-
	Eupl10g00345	810	SUPERFAMILY	Ubiquitin-like	19	103	IPR029071	-
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	604	651	-	-
	Eupl10g00345	810	CDD	Ubl_ubiquitin_like	26	93	-	-
	Eupl10g00345	810	MobiDBLite	consensus disorder prediction	255	283	-	-
	Eupl10g00345	810	PRINTS	Ubiquitin signature	55	75	IPR019956	-
	Eupl10g00345	810	PRINTS	Ubiquitin signature	76	97	IPR019956	-
	Eupl10g00345	810	PRINTS	Ubiquitin signature	34	54	IPR019956	-
	Eupl10g00345	810	FunFam	Large proline-rich protein BAG6	16	108	-	-
	Eupl10g00345	810	ProSiteProfiles	Ubiquitin domain profile.	24	99	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl10g00345	Eupl-Chr10	18569889	18609144	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl10g00345	24	95	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	38.889	2.85e-09	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl10g00345	K23390		-	nnu:104588575	901.738