Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00340 ATGGGTTCAAGCAACAGTCGTTTGGGGGCGCGCCCTTCTCGTCCCCGACTCAACCGCACCACCAAATACACGCTCTTCTCCTTCCTCTGCGGCGCCTCCTCCACTTCTCACCCTCCCATTGAGGAGACGGAAGATTATTCGCTTATGAGTTCTGCAGAACATTGTGATCCCATTGTTATTGGTAAATGCCAGGGCTCAACAAAGCAATCTTCTTCAATCCTATGTTCAGAAACTGAGTGTTCCAGCTCAACCGAAAATGGGGCATCATCTGAAAGCTGTAATGGAACTGTTGAGGACCTGTCTATAGAATATCCTTCAAGATGTATTGAGACGAGTAATGATGGGAAATGCTTGTCTGAAAGGAAGGAATTAGTTCCTTACCAGGCTAATGCTGATTATAGTCAAGTCGAGTCTGATCGGGAGAGAACTAGTGACATGGCTAGTAGCTCCTCTAAAGAACGACAATCTCTAGAGTCATTCTTTTTAAATGTAGGGCCTAGCTTGGATGTGGTTGTCGAGGTTGACGATTCTAAAAATGAGGGTGGGTCCCAGATTTGTGTGGAGGGGGTATGTTCAAGCAGTATATCACATCAGGGACTTGGAGATTTATGTGCAGATGGGGTGTCGCCTATTGAAAGTCATGCAGACGAAGTTCTGGGCGTCCATAATTCTGATTCAACTCCTGTTCCAGCTGTTTCTGATTCATCAGTAATTTGGCAATCACTAGGTGATGAATCTGCTCAAGAAACAGCAGCTCCAGGTCCAGGATTCCTCATGTCAGATAGACAACAAGAGAGGAGAGATGGAAGTCTACTTCATTTTGATGTGGTGAGTGTCTCTTCCAACATTTTACCTAGTAGCAGTGGGGAAATAAGTATCCGTGAGGCAAGACGGAATAGTAGAAGACTGTTTTGGGATGCTTTTTCGAGACGCGGTTCTAGAAGGCATAGTGAATCACCGACAATAGTTTTCTCAGCAGATGATATAGATGATCTGGGATCTCATGACAGATGGCTTCTTGATTTCAGTGGTGATCTCTTTGAGGATGGGTTTGGAGGTGATTCAGGATACCTGGACAGTAGAAGTCATGGCATGTATGAACGGCAATGGCATTCGAGATCCGAGATTTGGGAAAGACTTCGTGGTGGACTTGATGAAGGTAGTCGGCGAACTACTTGTGCATCTGGGCTTCACCCTGATGGTACATGCTTGTGTGAGTCATTCTTGATAGTGGATGAGTCGGGTTCCCATGAAAGTATTTCACGAATAGTCATGCTTGCTGAGGCCTTATTTGAGGTTTTGGATGAAATTCATCACCAACCTATGTCACTGTCACTATCAATGGTGTCACTCCCAGCTCCAGAGTCTGTTGTTAATTCTTTTCCTCTGAAGAGCCACAAAAAGCCTAATGCAGCTGATATCGGAAATGATATGGAACAGTGTTACATTTGCCTGGCCGAGTACGAGGAAGGGGATAAAATAAGAGTCCTACCCTGCAGCCACGAGTACCATATGTCATGTGTTGATAAATGGCTCAAGGAAATACACAGGGTGTGCCCACTTTGCCGCAGGGATGTTTGTGAGGGTGCTACCGAGGGATTAATCTCAAACTCATAA 1617 0.4539 MGSSNSRLGARPSRPRLNRTTKYTLFSFLCGASSTSHPPIEETEDYSLMSSAEHCDPIVIGKCQGSTKQSSSILCSETECSSSTENGASSESCNGTVEDLSIEYPSRCIETSNDGKCLSERKELVPYQANADYSQVESDRERTSDMASSSSKERQSLESFFLNVGPSLDVVVEVDDSKNEGGSQICVEGVCSSSISHQGLGDLCADGVSPIESHADEVLGVHNSDSTPVPAVSDSSVIWQSLGDESAQETAAPGPGFLMSDRQQERRDGSLLHFDVVSVSSNILPSSSGEISIREARRNSRRLFWDAFSRRGSRRHSESPTIVFSADDIDDLGSHDRWLLDFSGDLFEDGFGGDSGYLDSRSHGMYERQWHSRSEIWERLRGGLDEGSRRTTCASGLHPDGTCLCESFLIVDESGSHESISRIVMLAEALFEVLDEIHHQPMSLSLSMVSLPAPESVVNSFPLKSHKKPNAADIGNDMEQCYICLAEYEEGDKIRVLPCSHEYHMSCVDKWLKEIHRVCPLCRRDVCEGATEGLISNS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00340 538 Pfam Ring finger domain 480 523 IPR001841 -
Eupl10g00340 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 528 IPR013083 -
Eupl10g00340 538 ProSiteProfiles Zinc finger RING-type profile. 481 523 IPR001841 -
Eupl10g00340 538 MobiDBLite consensus disorder prediction 129 152 - -
Eupl10g00340 538 FunFam Putative RING zinc finger domain superfamily protein 448 528 - -
Eupl10g00340 538 SUPERFAMILY RING/U-box 474 528 - -
Eupl10g00340 538 SMART ring_2 481 522 IPR001841 -
Eupl10g00340 538 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00340 Eupl-Chr10 18502226 18512455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00340 390 527 C3H Transcription Factor Family AT5G45290 51.974 2.66e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00340 - - ming:122068977 619.387