Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl10g00338 | ATGGCTGGAATGCTTCCTGGGGTTGAATGCGCACGAAGGAGGCGATTCCATCAAGGAGGAGGATGCACAGACTCACAGAACGTAGCCGGGCATGGCCGAACAAGGCGCTCTTCTTTCTGTCTGTACACAAGCAACCATGAAAGCCATCTCAATTCAAGCTCGTCTCTGCAAAGAACGAAGTCGAACCAGAGTTTCCATGGTGAGAAACTTGAAGGTGTGGCTAGAGAAGCCAAGGAAAGATTGGATGAGAGGTTGAGGAACCAACGAAAATCAGAAACCAAGAGGGAAACTGGCAAAGGGAGCAGGAAGTGTGAGGTTGGTAGTGGGGTTTTAAGCTCTGTGATCCTAGGAGATGTGCAGAAAGATCAGGTGTTTGGATTGAAGAAGAGTAGCTCCAAGAGGTTCAGTTGGACGAAGTTAGCATGGAAGGCGTCGGACCAAGACGAGTGCGCAGTGTGCTTAGAACGTTTCAAGGTGGGTGAGACCCTGGTGCATCTCCCATGCGAACACAAATTCCATTCTAGGTGCTTGGTGCCATGGCTTGAGAGCAGTGCTCATTGCCCTTGTTGCAGAATGGGAGTCGTCTCAGCTTAA | 594 | 0.5017 | MAGMLPGVECARRRRFHQGGGCTDSQNVAGHGRTRRSSFCLYTSNHESHLNSSSSLQRTKSNQSFHGEKLEGVAREAKERLDERLRNQRKSETKRETGKGSRKCEVGSGVLSSVILGDVQKDQVFGLKKSSSKRFSWTKLAWKASDQDECAVCLERFKVGETLVHLPCEHKFHSRCLVPWLESSAHCPCCRMGVVSA* | 198 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl10g00338 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 195 | IPR013083 | - | |
Eupl10g00338 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 150 | 191 | IPR001841 | - | |
Eupl10g00338 | 197 | MobiDBLite | consensus disorder prediction | 49 | 63 | - | - | |
Eupl10g00338 | 197 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 55 | 192 | - | - | |
Eupl10g00338 | 197 | MobiDBLite | consensus disorder prediction | 49 | 105 | - | - | |
Eupl10g00338 | 197 | SUPERFAMILY | RING/U-box | 135 | 195 | - | - | |
Eupl10g00338 | 197 | MobiDBLite | consensus disorder prediction | 69 | 102 | - | - | |
Eupl10g00338 | 197 | SMART | ring_2 | 150 | 190 | IPR001841 | - | |
Eupl10g00338 | 197 | FunFam | Zinc finger family protein | 124 | 196 | - | - | |
Eupl10g00338 | 197 | CDD | RING-H2_PA-TM-RING | 149 | 191 | - | - | |
Eupl10g00338 | 197 | Pfam | Ring finger domain | 148 | 191 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl10g00338 | Eupl-Chr10 | 18481338 | 18483027 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl10g00338 | 1 | 86 | C3H Transcription Factor Family | AT2G15580 | 55.789 | 8.98e-27 | 97.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl10g00338 | - | - | nnu:104588514 | 274.633 |