Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00338 ATGGCTGGAATGCTTCCTGGGGTTGAATGCGCACGAAGGAGGCGATTCCATCAAGGAGGAGGATGCACAGACTCACAGAACGTAGCCGGGCATGGCCGAACAAGGCGCTCTTCTTTCTGTCTGTACACAAGCAACCATGAAAGCCATCTCAATTCAAGCTCGTCTCTGCAAAGAACGAAGTCGAACCAGAGTTTCCATGGTGAGAAACTTGAAGGTGTGGCTAGAGAAGCCAAGGAAAGATTGGATGAGAGGTTGAGGAACCAACGAAAATCAGAAACCAAGAGGGAAACTGGCAAAGGGAGCAGGAAGTGTGAGGTTGGTAGTGGGGTTTTAAGCTCTGTGATCCTAGGAGATGTGCAGAAAGATCAGGTGTTTGGATTGAAGAAGAGTAGCTCCAAGAGGTTCAGTTGGACGAAGTTAGCATGGAAGGCGTCGGACCAAGACGAGTGCGCAGTGTGCTTAGAACGTTTCAAGGTGGGTGAGACCCTGGTGCATCTCCCATGCGAACACAAATTCCATTCTAGGTGCTTGGTGCCATGGCTTGAGAGCAGTGCTCATTGCCCTTGTTGCAGAATGGGAGTCGTCTCAGCTTAA 594 0.5017 MAGMLPGVECARRRRFHQGGGCTDSQNVAGHGRTRRSSFCLYTSNHESHLNSSSSLQRTKSNQSFHGEKLEGVAREAKERLDERLRNQRKSETKRETGKGSRKCEVGSGVLSSVILGDVQKDQVFGLKKSSSKRFSWTKLAWKASDQDECAVCLERFKVGETLVHLPCEHKFHSRCLVPWLESSAHCPCCRMGVVSA* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00338 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 195 IPR013083 -
Eupl10g00338 197 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Eupl10g00338 197 MobiDBLite consensus disorder prediction 49 63 - -
Eupl10g00338 197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 55 192 - -
Eupl10g00338 197 MobiDBLite consensus disorder prediction 49 105 - -
Eupl10g00338 197 SUPERFAMILY RING/U-box 135 195 - -
Eupl10g00338 197 MobiDBLite consensus disorder prediction 69 102 - -
Eupl10g00338 197 SMART ring_2 150 190 IPR001841 -
Eupl10g00338 197 FunFam Zinc finger family protein 124 196 - -
Eupl10g00338 197 CDD RING-H2_PA-TM-RING 149 191 - -
Eupl10g00338 197 Pfam Ring finger domain 148 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00338 Eupl-Chr10 18481338 18483027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00338 1 86 C3H Transcription Factor Family AT2G15580 55.789 8.98e-27 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00338 - - nnu:104588514 274.633