Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00334 ATGGCGTACCACAACCATATCTCTCACGACATGGGGCTTCAGCATTTCACAGAACAACATTTAGGGGAAAACACGGCGGTTTTACGGAATATATTACCGGAACAGCTTGGTCAGTCTTCGTCTAACGCCACTGCCGGTGCAGGGAAAGAACAAAAAGATATACAACGTTTAATGATCGAAACAGCCGGAAAACCATCACCGCTTGGTGGCGGAGGTGGACCGACATGGCTTAACAACGCAATTCTCCGCCAACAAAACCAATACGTCGACGGCAGCTTCCTCCACTTACAGACTAATTCAGACTCCCCTAACTCCGCCGCTTCTAACCAGTGGCTTCCGCGCTCGATTCTCCAACGGAACGCTAGCGATGTTGCAGGCAACGATGTTCCGGTGTCGAGCGACTCCATGATCGCCGCTGCAATATCTCACGGCTCGGCCGACTTGGCTACCAATAACGATAACGGTAACAGGAACAATGGTAATAATCCGAACCAGCAGAACCACCAGGGTGACAATAGCGGTGGTGGAGTGGACTTAGCAGAGAGCGAAGCGGGCGGAGGAGGAGGAGGTGGAGAGAACGGACTTGGTCCTTGGCAGACTGCTAGGTATAAAGCTGATATCTTGGCGCATCCTTTGTACGAGCAATTGCTTTCGGCGCACGTTTCTTGTTTGCGCATTGCGACGCCGGTCGATCAGTTGCCTCGGATTGACGCGCAGCTTGCGCAGTCGCAGCATGTTGTTGCAAAGTATTCGGTTCTCGGACACGGTAATCAGCAGCTCGTCGGTGACGATAAGGAGCTCGATCAGTTCATGACACATTATGTTCTGTTGCTTTGTTCCTTTAAAGAACAACTGCAGCAGCATGTTCGTGTCCATGCAATGGAAGCTGTGATGGCTTGCTGGGAGCTTGAGCAATCTCTGCAAAGCTTAACAGGTGTCTCTCCAGGTGAAGGCACAGGTGCAACCATGTCAGATGACGATGATGACCAGGCAGATAGTGACACCAACTTGTATGATGGAAGCTTGGAGGGGCCAGACAGCATGGGGTTTGGTCCTCTCATCCCAACCGAGAGTGAGAGGTCCTTGATGGAGCGTGTGAGGCAAGAGCTGAAGCATGAGCTGAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGGGAGGAGATTCTACGTAAGAGAAGAGCAGGGAAACTCCCAGGAGACACTACGTCCCTCTTAAAGGCTTGGTGGCAGTCACATTCCAAGTGGCCGTACCCAACAGAGGAAGACAAGACAAGGCTGGTGCAGGAAACAGGTTTGCAATTAAAGCAGATTAATAACTGGTTCATCAACCAGAGGAAGAGGAACTGGCACAATAATCCTTCATCTTCGACGGTTATGAAGAGCAAACGCAAGAGAAGTAATGCAGGTGACAACAGCGGTGAACACTTCATGTAG 1437 0.5066 MAYHNHISHDMGLQHFTEQHLGENTAVLRNILPEQLGQSSSNATAGAGKEQKDIQRLMIETAGKPSPLGGGGGPTWLNNAILRQQNQYVDGSFLHLQTNSDSPNSAASNQWLPRSILQRNASDVAGNDVPVSSDSMIAAAISHGSADLATNNDNGNRNNGNNPNQQNHQGDNSGGGVDLAESEAGGGGGGGENGLGPWQTARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAQSQHVVAKYSVLGHGNQQLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDDDDQADSDTNLYDGSLEGPDSMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHNNPSSSTVMKSKRKRSNAGDNSGEHFM* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00334 478 MobiDBLite consensus disorder prediction 311 352 - -
Eupl10g00334 478 Pfam KNOX1 domain 203 244 IPR005540 GO:0003677|GO:0005634
Eupl10g00334 478 SMART KNOX2_2 257 312 IPR005541 GO:0003677|GO:0005634
Eupl10g00334 478 Gene3D - 395 472 - -
Eupl10g00334 478 Pfam KNOX2 domain 261 311 IPR005541 GO:0003677|GO:0005634
Eupl10g00334 478 MobiDBLite consensus disorder prediction 446 478 - -
Eupl10g00334 478 SMART ELK_2 369 390 IPR005539 GO:0003677
Eupl10g00334 478 SMART HOX_1 391 456 IPR001356 GO:0003677
Eupl10g00334 478 FunFam homeobox protein knotted-1-like 3 isoform X1 390 451 - -
Eupl10g00334 478 MobiDBLite consensus disorder prediction 446 463 - -
Eupl10g00334 478 SMART KNOX1_2 201 245 IPR005540 GO:0003677|GO:0005634
Eupl10g00334 478 Pfam ELK domain 369 390 IPR005539 GO:0003677
Eupl10g00334 478 ProSiteProfiles ELK domain profile. 369 389 IPR005539 GO:0003677
Eupl10g00334 478 MobiDBLite consensus disorder prediction 147 173 - -
Eupl10g00334 478 SUPERFAMILY Homeodomain-like 391 456 IPR009057 -
Eupl10g00334 478 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 170 461 - -
Eupl10g00334 478 MobiDBLite consensus disorder prediction 147 195 - -
Eupl10g00334 478 CDD homeodomain 392 453 IPR001356 GO:0003677
Eupl10g00334 478 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Eupl10g00334 478 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00334 Eupl-Chr10 18376081 18388277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00334 74 466 Homeobox Transcription Factor Family AT5G25220 66.908 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl10g00334 KNOX2 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00334 - - ming:122086517 801.201