Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00307 ATGGTTCACTTGAGCTTTTACAGGAACTATGAGAAGACTTTTAAGAAGCCTTGTCGTCCGTACGAGGAGGAGCATTTGGACTCTGAGCTGAAGCTCGTTGAAGAGCGTAGGCTCCAATGTAAGAGGGAGCTTTGGAGGGTTCAGTATGCTCTCAGCCGCATCCGTAATAACGCAATGATGCTTCTTACTCTCGATGAGAAGAATCCTCACCGGATCTTTGAGGATAAAGCGCCTCTCCGTCGGATGAATATGTATTGTCTTTTGGACGAGCGCCAGAACAAACTCGATTATTTCCTGGCCTTGACCATGGAGAACTTTCTTGAATGCCATCTCCCGACAGTGGGGTATGGTGAAATCTATCCACCACGCCTGTGTGCTCATTAG 384 0.4766 MVHLSFYRNYEKTFKKPCRPYEEEHLDSELKLVEERRLQCKRELWRVQYALSRIRNNAMMLLTLDEKNPHRIFEDKAPLRRMNMYCLLDERQNKLDYFLALTMENFLECHLPTVGYGEIYPPRLCAH* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00307 127 SUPERFAMILY Alpha-L RNA-binding motif 13 113 - -
Eupl10g00307 127 PANTHER 30S 40S RIBOSOMAL PROTEIN 8 114 IPR022801 GO:0003735|GO:0015935|GO:0019843
Eupl10g00307 127 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00307 Eupl-Chr10 17979180 17988641 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00307 1 114 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 74.561 7.27e-55 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00307 K02997 - cave:132176472 180.644