Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00306 ATGGAATCACTAAGAGCAGAACCATGTCTCTCAGAGACTACCTCAAGCATCATCTCAGTATCAGAAGAGAAGCCCAAAGAGCAACAAGAACAAGAAGAAGAGAAAAACCCTAGTCTCTTACTAGATCTGATCCTCCCATCTGGTGAGGATTCTGATCATGGGTCGAAGCCAGAACTCAATCTTATCGATTGTTTAAACGTGGGTTCATCTCAAAATTCCTTGGAGAATCGTCAAGAGACTGAGCCACGTGTTTTCTCTTGTAACTATTGCCAAAGGAAATTCTATAGTTCACAAGCACTCGGAGGGCACCAGAACGCGCATAAGCGTGAGCGGACTTTAGCAAAGAGAGGGCAACGGTTAGGAACCCCTGCAGCTGCTTTCGGTCATCCTTTCTCGCACCAAAACAGATATTCAAGCATGGCTTCTCTACCTCTTAATGGTTCCTTCAATAGGTCACTTGGCATTCAGGTGCACTCAATGATCCATAAGCCGTCTTATCTAACGTCATCCTCTGGTTCTGCTCATGTCTATGGACATCATGGGTGGTCCAGGCCGCCTATTGATCAACAACCGGCAATTGGAAGACTAACGATGGAGAACTCGGCCGTTGGATCGGCGTCCAGAGGTGGCGCCGCTAGGTTCGACAACGGTTGGATGTTTGGTTCTTCAGATGATGAGGGAATTGGTGCTTGTTCTTGGGCAGTTGGTGGTCGTTTGAAGACTAATCAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAGCTCTAA 768 0.4714 MESLRAEPCLSETTSSIISVSEEKPKEQQEQEEEKNPSLLLDLILPSGEDSDHGSKPELNLIDCLNVGSSQNSLENRQETEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRLGTPAAAFGHPFSHQNRYSSMASLPLNGSFNRSLGIQVHSMIHKPSYLTSSSGSAHVYGHHGWSRPPIDQQPAIGRLTMENSAVGSASRGGAARFDNGWMFGSSDDEGIGACSWAVGGRLKTNQEELQKLDLSLKL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00306 255 SUPERFAMILY beta-beta-alpha zinc fingers 81 112 IPR036236 -
Eupl10g00306 255 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Eupl10g00306 255 MobiDBLite consensus disorder prediction 23 37 - -
Eupl10g00306 255 Gene3D Classic Zinc Finger 65 125 - -
Eupl10g00306 255 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Eupl10g00306 255 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 255 IPR044246 GO:0009788
Eupl10g00306 255 FunFam Zinc finger protein 2 65 132 - -
Eupl10g00306 255 MobiDBLite consensus disorder prediction 8 22 - -
Eupl10g00306 255 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00306 Eupl-Chr10 17917035 17918011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00306 18 255 C2H2 Transcription Factor Family AT5G10970 44.882 2.06e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl10g00306 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00306 - - ming:122071236 314.694