Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00300 ATGGTTCACGTGAGCTTTTACAGGAACTATGAGAAGACTTTTAAGAAGCCTTATCGTCCGTACGAGGAGGAGCATTTGGACTCTGAGCTGAAGCTCGTTGGAGAGCGTAGGCTCCAATGTAAGAGGGAGCTTTGGAGGGTTCAGTATGCTCTCAGCCGCATCCGTAATAACGCAATGATGCTTCTCACTCTCGATGGGAAGAATCCTCACCGGATCTTTGAGGATAAAGCGCCTCTCCGTCGGATGAATATGTATTGTCTTTTGGACGAGCGCCAGAACAAACTCGATTATTTCTTGGCCTTGACCATGGAGAACTTTCTTGAGTGCCATCTCCCGACGCTTGTGTTCAAGTGGGGTATGGTGAAATCTATCCACCACTCCTGTGTGCTCATTAGGCAGAGGCATATCAGTCCCATTAATTGTATTTTCACTGAAGCAGCTGAATCCTCTGGGAATTCGGAGCTTGAAGACAAGGTGTTCTTGATTTTCAGTTCTCTCACTGCCAATTTGGTGCAGTTTGGATGTAAATGCCTGCAGAAGTGTGTCTTCAAACGTTAG 558 0.4659 MVHVSFYRNYEKTFKKPYRPYEEEHLDSELKLVGERRLQCKRELWRVQYALSRIRNNAMMLLTLDGKNPHRIFEDKAPLRRMNMYCLLDERQNKLDYFLALTMENFLECHLPTLVFKWGMVKSIHHSCVLIRQRHISPINCIFTEAAESSGNSELEDKVFLIFSSLTANLVQFGCKCLQKCVFKR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00300 185 SUPERFAMILY Alpha-L RNA-binding motif 13 136 - -
Eupl10g00300 185 NCBIfam 30S ribosomal protein S4 8 137 IPR005710 GO:0003735|GO:0006412|GO:0015935
Eupl10g00300 185 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Eupl10g00300 185 PANTHER 30S 40S RIBOSOMAL PROTEIN 8 136 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00300 Eupl-Chr10 17782311 17784394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00300 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 76.471 1.35e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00300 K02997 - cave:132176472 218.009