Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00285 ATGGAGTTGATTGATGATGTTGAAATTGAGACGAAAGCCAAGGATATGAGTAGTTTGGTTGAGAGACTTCGTATTAGGTCAACAGATCGAAAGCCTTTGTATAATGTAGATGAATCAGATGATGAGGCTGATCTTTTGCAAGGCTCTGGGCCTACCTCTCAAGTTAAGCCCGAAAGAATAGTTAGAACTGATGCGAAAGATGATTCATGTCAAGCCTGTGGAGGAAGTGGGAATCTTCTTAGATGCGAGACATGCACTTATTTATATCATTCCAAGTGTTTACTTCCTCCATTGAAAGTTCCTCCTCCAGACAGATGGAGTTGCCCAGAATGTGTGAGCCCTTTAAATGACATTGACAAGATCTTGGACTGCGAAATGCGGCCTACTGTAGCTGGTGATAGTGATGCATCAAAGCTGGGATCAAAACAAATATTTGTTAAACAGTATCTTGTAAAGTGGAAGGGATTGTCTTATCTGCACTGCATTTGGGTGCCGGAGAAGGAATTTCTAAAGGCTTTCAAGGCACATCCTCGTTTGAGGACTAAAGTAAATAACTTCCATCGTCAAATGGCATCGGTGAATAACTCCGACGATGACTTCGTTGCGATACGACCTGAATGGACTACTGTTGATAGGATTCTTGCTAGCAGGTTGAATGGTAATGAGAGGGAGTATCTTGTGAAATGGAAAGAGCTTCCTTATGATGAATGCTACTGGGAAGTTGAATCGGACATTTCTGCATTTCAACCTGAAATTGAAAGATTTAATAGAATTCGGTCTAGGTCTCGCAAATCATCTTCTGGTAAGCAGAAAAGTTCTGTTCGCGATGCAAAGGAATCAAAAAAGAAGCAGAAAGAATTTCAACATTTTGAACATAGCCCTGAATTTCTTTCTGGAGGTTCACTACATCCATATCAGCTAGAAGGGTTGAATTTTTTGCGCTTTTCTTGGTCTAAACAGACACACGTGATCCTTGCAGATGAGATGGGTCTTGGGAAAACTATACAGAGTATTGCATTTCTAGCGTCTCTATTTGGAGACAACATCTCTCCTTATTTAGTAGTGGCACCCCTTTCAACATTGCGCAACTGGGAACGTGAATTTGCAACGTGGGCTCCTCAAATGAATGTTGTGATGTATGTTGGATCTTCCCAAGCTCGTGCAATTATTAGGGAATATGAATTTTTCTTCCCCAAAAGTGAATTTAAGAAGCACAAGAAAAAGAAAGCCGGTCATGTTGTCAGTGAAAGCAAGCAAGACAGAATAAAATTTGATGTCCTTTTAACATCATATGAAATGGTTAATCTGGATTCGGCATCTTTGAAACCAATAAAGTGGGAGTGCATGATTGTCGATGAAGGTCATCGCCTCAAGAACAAAGATTCAAAATTATTTCTTTCATTGAAGCAATATTCTAGTAATCATCGTGTGCTTTTAACTGGAACTCCTCTTCAGAATAACCTGGATGAGCTGTTCATGCTCATGCATTTTCTTGATGCTGGAAAGTTTGCAAGTTTGGAGGAGTTTCAGGAGGAGTTCAAGGATATCAATCAAGAGGAGCAGATCGCAAGGCTTCATAAAATGCTGGCTCCACATCTTCTCAGACGAGTCAAGAAGGATGTCATGAAGGAGATGCCGCCTAAAAAAGAACTCATTTTACGTGTTGAATTGAGTAGCAAACAGAAGGAATACTACAAAGCCATTCTGACCCGTAACTATCAGATACTAGCTCGCCGAGGTGGTGCACAGATTTCTCTCATCAATGTGGTTATGGAGCTGCGGAAGCTCTGTTGTCATGCGTATATGTTAGAGGGAGTTGAACCGGAGATAGAAGATACGAATGAAGCTTACCGACAGCTACTGGATTCTTCTGGAAAATTGCATTTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTTCTTATATATTCGCAGTTTCAGCACATGCTGGACTTACTGGAAGACTACTGTACTTATAAGAAATGGCTCTATGAACGGATTGATGGCAAAGTTGCTGGAGCAGAAAGACAGATCCGCATAGATCGGTTCAATGCCAAGAACTCTTCCAGATTTTGTTTTCTGCTTTCTACTAGAGCTGGGGGGTTGGGAATAAATCTTGCAACTGCTGACACAGTTTTTATTTATGACAGTGATTGGAATCCTCACGCTGATTTACAAGCAATGGCTAGAGCTCACCGGCTTGGGCAGACCAATAAGGTAATGATTTATAGGCTCATAACACGAGGAACCATTGAAGAAAGGATGATGCAGATGACCAAAAAGAAAATGGTTTTAGAGCATCTGGTTGTGGGGAGGCTTAAAGCACAAAATATTAATCAGGAAGAGTTAGATGACATCATAAGATATGGCTCAAAGGAGTTGTTTGCTGATGAAAGTGATGAAGCTGGTAAAGCTCGTCAAATTCATTATGATGATTCTGCAATAGATAGATTACTTGATCGTGAACAAATTGGAGATGAAGAGGCTACAGTGGATGATGAAGAAGAAGATGGCTTTTTGAAGGCCTTCAAGGTGGCAAATTTTGAATATATAGATCAAGTGGAAGCTGCAGCTGAAGAGGAAGCCAAGAAAGCTTCTATGGTTAATAAAACTACTGTCGGCAACTCAGAAAGAGCAAATTACTGGGAAGAATTGCTGAGGGATAGATATGAAGTGCATAAAATTGAAGAGTTTACTTCTTTGGGCAAGGGAAAGAGAAGCCGTAAACAGATGGTATCTGTTGAAGATGATGATCTTGCTGGTTTAGAAGATGCGAGTTCCGATGGTGAGGATGATAGTAATGAAGCTGACTGGATTGACGCTGAAATTTCATCTGGAATTGCACCTGGGCGAAAGCCTCATGTTTCAAAGAAGAAAGCTCGTGTGGATGGTATGGAACCACTTCCTCTGATGGAAGGTGAAGGGAAATCGTTTAGAGTTCTTGGATTCAATCAAAACCAGAGGGCTGCATTTGTCCAAATATTGATGAGGTTTGGAGTAGGTGATTTTGATTGGAGTGAATTTACTCCTCGCTTGAAGCAGAAGACCTTTGAGGAAATTAAGGAATATGGGACACTCTTCTTGGCTCACATTGCTGAAGATATTACCGAGTCACCGTCCTTTTCAGATGGTGTGCCAAAAGAAGGACTTAGGATACATGATGTACTTGTTAGGGTTGCAGTTTTGCTTTTGATAAGAGACAAGGTGAAGCTTCTGTCAGAAAAGCCTGGTACTCCCCTTTTTGCAGAAGACATTGTATCACGCTTCCCAGGGATGAGGAGTGGAAGATCATGGAAAGAGGAGCATGATTTATCATTATTGCAGGCGGTATTAAAGCATGGATATGGAAGATGGCAAGCTATTGTTGAAGATAAGGATTTACGGATCCAGGAGATCATTTGTCAGGAGCAGAATCTCCCTTTCGTAAACAGTTCCTTCACTGGAGGTGTTCAAATGCATGATGGTGCAAACACGACCAACCCAGAAGGAACATCCAACAGCCAGTTAAAGGGAACTGGTGGTGGAAATGATTCTGGATCTGATGTTGCACATGGTGTCACTGAAAATGCAATCCGGACCCAATTATATCCGGATCCCTCTGTGTTATATCATTTTAGAGAGATGCAGAGAAGACTGGTTGAATTTATTAAAAAGAGGGTTCTTCTCTTGGAGAAAGCACTCAATGCAGAGTACCAGAAAGAATTTTTT 3720 0.4113 MELIDDVEIETKAKDMSSLVERLRIRSTDRKPLYNVDESDDEADLLQGSGPTSQVKPERIVRTDAKDDSCQACGGSGNLLRCETCTYLYHSKCLLPPLKVPPPDRWSCPECVSPLNDIDKILDCEMRPTVAGDSDASKLGSKQIFVKQYLVKWKGLSYLHCIWVPEKEFLKAFKAHPRLRTKVNNFHRQMASVNNSDDDFVAIRPEWTTVDRILASRLNGNEREYLVKWKELPYDECYWEVESDISAFQPEIERFNRIRSRSRKSSSGKQKSSVRDAKESKKKQKEFQHFEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGDNISPYLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQARAIIREYEFFFPKSEFKKHKKKKAGHVVSESKQDRIKFDVLLTSYEMVNLDSASLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYSSNHRVLLTGTPLQNNLDELFMLMHFLDAGKFASLEEFQEEFKDINQEEQIARLHKMLAPHLLRRVKKDVMKEMPPKKELILRVELSSKQKEYYKAILTRNYQILARRGGAQISLINVVMELRKLCCHAYMLEGVEPEIEDTNEAYRQLLDSSGKLHLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWLYERIDGKVAGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVFIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADESDEAGKARQIHYDDSAIDRLLDREQIGDEEATVDDEEEDGFLKAFKVANFEYIDQVEAAAEEEAKKASMVNKTTVGNSERANYWEELLRDRYEVHKIEEFTSLGKGKRSRKQMVSVEDDDLAGLEDASSDGEDDSNEADWIDAEISSGIAPGRKPHVSKKKARVDGMEPLPLMEGEGKSFRVLGFNQNQRAAFVQILMRFGVGDFDWSEFTPRLKQKTFEEIKEYGTLFLAHIAEDITESPSFSDGVPKEGLRIHDVLVRVAVLLLIRDKVKLLSEKPGTPLFAEDIVSRFPGMRSGRSWKEEHDLSLLQAVLKHGYGRWQAIVEDKDLRIQEIICQEQNLPFVNSSFTGGVQMHDGANTTNPEGTSNSQLKGTGGGNDSGSDVAHGVTENAIRTQLYPDPSVLYHFREMQRRLVEFIKKRVLLLEKALNAEYQKEFF 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00285 1240 CDD CD1_tandem 114 188 - -
Eupl10g00285 1240 Pfam PHD-finger 70 112 IPR019787 -
Eupl10g00285 1240 Gene3D - 294 545 IPR038718 -
Eupl10g00285 1240 SMART PHD_3 69 112 IPR001965 -
Eupl10g00285 1240 CDD CD2_tandem 206 255 - -
Eupl10g00285 1240 ProSiteProfiles Zinc finger PHD-type profile. 67 114 IPR019787 -
Eupl10g00285 1240 SUPERFAMILY Chromo domain-like 82 192 IPR016197 -
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 269 285 - -
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 34 55 - -
Eupl10g00285 1240 Gene3D - 114 204 - -
Eupl10g00285 1240 Pfam Chromo (CHRromatin Organisation MOdifier) domain 209 256 IPR023780 -
Eupl10g00285 1240 Pfam Chromo (CHRromatin Organisation MOdifier) domain 118 173 IPR023780 -
Eupl10g00285 1240 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 63 1161 - -
Eupl10g00285 1240 SMART chromo_7 206 260 IPR000953 -
Eupl10g00285 1240 SMART chromo_7 115 178 IPR000953 -
Eupl10g00285 1240 SMART DUF1086_2 930 1090 IPR009462 GO:0003677|GO:0006338
Eupl10g00285 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 536 IPR027417 -
Eupl10g00285 1240 Gene3D - 1057 1197 - -
Eupl10g00285 1240 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 629 790 IPR001650 -
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 1158 1179 - -
Eupl10g00285 1240 Gene3D - 205 257 - -
Eupl10g00285 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 793 IPR027417 -
Eupl10g00285 1240 Gene3D - 546 770 IPR027417 -
Eupl10g00285 1240 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 501 IPR014001 -
Eupl10g00285 1240 CDD SF2_C_SNF 624 750 - -
Eupl10g00285 1240 Pfam CHD subfamily II, DUF1087 861 922 IPR009463 -
Eupl10g00285 1240 SUPERFAMILY Chromo domain-like 197 259 IPR016197 -
Eupl10g00285 1240 Pfam CHD subfamily II, SANT-like domain 959 1087 IPR009462 GO:0003677|GO:0006338
Eupl10g00285 1240 SMART helicmild6 655 739 IPR001650 -
Eupl10g00285 1240 ProSitePatterns Zinc finger PHD-type signature. 70 111 IPR019786 -
Eupl10g00285 1240 SMART DUF1087_2 859 925 IPR009463 -
Eupl10g00285 1240 SMART ultradead3 298 512 IPR014001 -
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 921 938 - -
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 1158 1187 - -
Eupl10g00285 1240 Pfam Helicase conserved C-terminal domain 627 739 IPR001650 -
Eupl10g00285 1240 Pfam SNF2-related domain 322 602 IPR000330 GO:0005524|GO:0140658
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 910 938 - -
Eupl10g00285 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 113 IPR013083 -
Eupl10g00285 1240 MobiDBLite consensus disorder prediction 259 285 - -
Eupl10g00285 1240 ProSiteProfiles Chromo and chromo shadow domain profile. 116 198 IPR000953 -
Eupl10g00285 1240 ProSiteProfiles Chromo and chromo shadow domain profile. 208 267 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00285 Eupl-Chr10 17217205 17304573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00285 624 790 RAD5 or RAD16-like Gene Family AT5G22750 32.335 4.64e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl10g00285 SNF2_N 2.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00285 K11643 - ming:122080916 2064.66