Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00278 ATGTCTGGTGAAGAGGCTGTTGTTGTAGCAGAGACACCTGCTCCAGCTCTAGGTGAGCCAATGGACATCATGACGGCACTGCAGCTTGTGCTTAAGAAATCGCTGGCTCATGACGGGCTTGCCCGAGGGCTCCATGAAGGTGCCAAGGTGATTGAGAAGCATGCTGCACAACTCTGTGTACTGGCAGAGGACTGCGACCAGCCAGACTATGTTAAACTGGTCAGAGCACTTTGTGCTGACCACAATGTAAGCTTGATATCAGTTCCAAGTGCTAAAACTCTTGGCGAATGGGCAGGCGTAAGTAGAAACTATTGCCAATTTCTCTGTTTTGCGAGATTCATTGTTTTTCCTGTACCTCGAGAGATTTCTTTCTCTTGGGTACTTGATGGTTTGTTTCTAGTTGCACTTTGCTTATTCACTTCTCTGATCGTCTTTTCTTACTTCGGAAAGGATATCAGCTGGAAGAGAATAAGCATTGTATGCTCAGTTTCTTCTTTCTGTTTAGAAAGGACAACTTTGTATATTAGAGCAAGACAATAA 540 0.4463 MSGEEAVVVAETPAPALGEPMDIMTALQLVLKKSLAHDGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVRALCADHNVSLISVPSAKTLGEWAGVSRNYCQFLCFARFIVFPVPREISFSWVLDGLFLVALCLFTSLIVFSYFGKDISWKRISIVCSVSSFCLERTTLYIRARQ* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00278 179 PRINTS Ribosomal protein S12E family signature 85 106 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl10g00278 179 PRINTS Ribosomal protein S12E family signature 44 60 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl10g00278 179 PRINTS Ribosomal protein S12E family signature 30 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl10g00278 179 FunFam 40S ribosomal protein S12 6 104 - -
Eupl10g00278 179 SUPERFAMILY L30e-like 19 108 IPR029064 -
Eupl10g00278 179 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 26 103 IPR004038 -
Eupl10g00278 179 ProSitePatterns Ribosomal protein S12e signature. 26 44 IPR000530 GO:0003735|GO:0005840|GO:0006412
Eupl10g00278 179 Gene3D - 6 111 IPR029064 -
Eupl10g00278 179 PANTHER 40S RIBOSOMAL PROTEIN S12 14 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00278 Eupl-Chr10 17020012 17024494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00278 19 102 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 69.048 4.90e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00278 K02951 - ncol:116253963 182.185