Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl10g00277 ATGGGGTTCTGGAAATTTGTTTTCAATCTCTTTTTATTTTTTCTCTTCTTGCATGAGGAATTCGGCCCATATGTTTTACTTTTCTTGATTTTTCGCTTTTTGCGTAACAAAATGAAGAGAAAGATGCCAAAAGAAGCTTCTCAAAGCAGCTTCTGCGAGATTTGCATGGAAGGGAAACCAAAAGAAGAGATGTTCATGATGAATAAGTGTTCTCACTCCTTCTGTTCCCACTGTATGGGCAAACATGTTGAGGCTAAGATCCAAGACAACATCGGCAAGGTTACGTGCCCAGGACTGAACTGCAAGGCGGTGTTAGAACCCAACCTTCTCAAATCGATTATCCCTGACCAAGTGTTTGATCGGTGGGGTAAAGCTTTATGTGAGTCTTTAATTCCTGAATCGCAGAAATTTTACTGCCCTTTCGAGAACTGTTCGGCGATGTTGGTGGACGATGGAGGGGAGGTGGTTAGGGAGTCGGAGTGTCCGAATTGCCATAGAATGTTCTGCGCACAGTGCAAGGTCCCATGGCATTCAGGGAGGAGCTGTGAGGATGTTCAGAGATTGAAGGAGGATGAGAGAGCAGATCTCATGGTGAAGGCACTTGCTGAGAAGGAAAAATGGTCGAGATGTCCAAATTGCAACTACTTTGTGGAAAAGAAAGACGGCTGTGTGCATATGACTTGCAGAAGAGAGAGATGCCGAAATAAGCTTCTCAAAGCAGAGTCTGAGATTTGCATGGAAAGGAAACCAAAAGAAGAGATGTTCAGAATGAACAAGTGTTCTCACTCCTTCTGTTCCCAATGTATGAGCAAACATGTTGAGGCTAAGATCCAAGACAACATCATCAAGGTTACGCGCCCAGTGCAATATCCCAATCCCATGGCATTCAGGGGAGGGAAGAGTGGTGAGGATGTTCAGAGATTGAAGGAGGATGAGAGAGCAGATCTCATGGTGAAGGTGCTTGCTGAGAAAGAAAAATGGTCGAGATGTCCAAATTGCGACTACTTTGTGGAAAAGAAAGACGGCTGTGTGCAAATGACTTGCAGGTGCGGATCTCAATTTTGTTATATCTGTGGATCCAAGTGGACTCAAACTCATGGTGGTGCTTGCCAATTTTGTTATCGGTGCGGATCGAAGTGGACTCAAACTCATGGTGGTGCTTGCCAGAGAACGTAG 1176 0.4481 MGFWKFVFNLFLFFLFLHEEFGPYVLLFLIFRFLRNKMKRKMPKEASQSSFCEICMEGKPKEEMFMMNKCSHSFCSHCMGKHVEAKIQDNIGKVTCPGLNCKAVLEPNLLKSIIPDQVFDRWGKALCESLIPESQKFYCPFENCSAMLVDDGGEVVRESECPNCHRMFCAQCKVPWHSGRSCEDVQRLKEDERADLMVKALAEKEKWSRCPNCNYFVEKKDGCVHMTCRRERCRNKLLKAESEICMERKPKEEMFRMNKCSHSFCSQCMSKHVEAKIQDNIIKVTRPVQYPNPMAFRGGKSGEDVQRLKEDERADLMVKVLAEKEKWSRCPNCDYFVEKKDGCVQMTCRCGSQFCYICGSKWTQTHGGACQFCYRCGSKWTQTHGGACQRT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl10g00277 391 ProSiteProfiles TRIAD supradomain profile. 48 377 IPR044066 -
Eupl10g00277 391 CDD BRcat_RBR_unk 133 184 - -
Eupl10g00277 391 ProSitePatterns Zinc finger RING-type signature. 260 269 IPR017907 -
Eupl10g00277 391 FunFam RBR-type E3 ubiquitin transferase 47 133 - -
Eupl10g00277 391 ProSitePatterns Zinc finger RING-type signature. 70 79 IPR017907 -
Eupl10g00277 391 Gene3D - 301 371 - -
Eupl10g00277 391 Gene3D - 179 280 - -
Eupl10g00277 391 SMART ibrneu5 120 182 IPR002867 GO:0008270
Eupl10g00277 391 SMART ibrneu5 311 370 IPR002867 GO:0008270
Eupl10g00277 391 SUPERFAMILY RING/U-box 314 368 - -
Eupl10g00277 391 Pfam Zinc finger, C3HC4 type (RING finger) 52 97 IPR018957 GO:0046872
Eupl10g00277 391 SUPERFAMILY RING/U-box 132 187 - -
Eupl10g00277 391 ProSiteProfiles Zinc finger RING-type profile. 52 97 IPR001841 -
Eupl10g00277 391 CDD Rcat_RBR_unk 326 362 - -
Eupl10g00277 391 Pfam RING-type zinc-finger 244 270 IPR027370 -
Eupl10g00277 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 131 IPR013083 -
Eupl10g00277 391 SMART ring_2 52 99 IPR001841 -
Eupl10g00277 391 SMART ring_2 242 295 IPR001841 -
Eupl10g00277 391 SMART ring_2 330 373 IPR001841 -
Eupl10g00277 391 SUPERFAMILY RING/U-box 194 233 - -
Eupl10g00277 391 SUPERFAMILY RING/U-box 244 282 - -
Eupl10g00277 391 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 305 378 IPR031127 GO:0004842|GO:0016567
Eupl10g00277 391 SUPERFAMILY RING/U-box 48 132 - -
Eupl10g00277 391 Pfam IBR domain, a half RING-finger domain 127 182 IPR002867 GO:0008270
Eupl10g00277 391 Pfam IBR domain, a half RING-finger domain 321 367 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl10g00277 Eupl-Chr10 17009353 17014904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl10g00277 244 359 C3H Transcription Factor Family AT2G31770 29.600 8.44e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl10g00277 K11975 - psom:113337061 300.056